Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0250
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.048
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              29   2.4  
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   2.4  
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.4  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   7.2  
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  27   9.6  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.6  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -1

Query: 72  DVVAVSQAPSPESNPDSPLPVTTM 1
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -1

Query: 63  AVSQAPSPESNPDSPLPVTTM 1
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 62  PFLRLPLRNRTLIPRYP 12
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 505 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPVHRRYA 350
           +N +   LAR+  + +F   ++  AHLDT RR P    D+     R  +  RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 44  YIKVVAVKKLVVGFRDGTVGPP 65


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 81  YIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 34  YIKVVAVKKLVVGFRDGTVGPP 55


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 255 YTKIVAVKKLVVAFVRRAVGAP 320
           Y K+VAVKKLVV F    VG P
Sbjct: 21  YIKVVAVKKLVVGFRDGTVGPP 42


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 211 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL 116
           PSN  CS L YL+C          +R+++F H L
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLL 556


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 81  PSLDVVAVSQAPSPESNPDSPLP 13
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 73  QGRQQARK--LPTPGTGGSDEK*RYGTLTRPRNRN 171
           QGR + RK  L  PG GGSD K R     +   RN
Sbjct: 136 QGRDEVRKAILDIPGEGGSDMKSRLQREVQEARRN 170


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 630 DDPRISPLTSQYEC 589
           DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,314
Number of Sequences: 59808
Number of extensions: 395941
Number of successful extensions: 1123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)