Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0250
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80955-7|AAG01555.1|  116|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 101 GNLRACCLPWMW*PFLRLPLR 39
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 266 CCG*KARSCICAPRCRC 316
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>U80955-7|AAG01555.1|  116|Caenorhabditis elegans Hypothetical
           protein T04C9.2 protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 293 ICAPRCRCTASAVILTRLRSISSVNRRSKKRRFNIKILSRCSSVSVEVGRQFYFEQIRVL 472
           I A RCRC     +  R+ S SS  + S         L   ++++V V   F+FE++R  
Sbjct: 34  IAASRCRCRRPPFLSIRIGSTSSRRQESS--------LPSINAITVVVVVAFFFEKMRKA 85

Query: 473 KAG*KCC 493
           +   + C
Sbjct: 86  RKNDELC 92


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 56  ETATTSKEGSRRANYPLPAREVVTKNNDTGLLRGLVIGMST 178
           E   T    +RR + PLPA    + +N+TGLL  ++  +++
Sbjct: 3   ENGATPVAAARR-HRPLPAERATSNSNETGLLINVIRSLTS 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,300
Number of Sequences: 27780
Number of extensions: 292322
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)