Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0250
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
 Frame = -3

Query: 604 VAIRMPPVIPINH-----YLGVLKTNT 539
           +A+  PPV+P NH     YL V++ N+
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERNS 379


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
 Frame = -3

Query: 604 VAIRMPPVIPINH-----YLGVLKTNT 539
           +A+  PPV+P NH     YL V++ N+
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERNS 379


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
 Frame = -3

Query: 604 VAIRMPPVIPINH-----YLGVLKTNT 539
           +A+  PPV+P NH     YL V++ N+
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERNS 379


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 79   RQQARKLPTPGTGGSDE 129
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 79   RQQARKLPTPGTGGSDE 129
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -3

Query: 544 NTIEPRSYSIIPARNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR 407
           NT+E  + + +    +   F  + E SN+++   + + DT   A R
Sbjct: 681 NTMENLTCATVKGSAVDMYFRRQVELSNMYRTMEANNYDTAEEAIR 726


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,786
Number of Sequences: 438
Number of extensions: 3915
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)