Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0246
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    31   0.12 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    28   0.88 
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   2.7  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   3.5  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   4.7  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   4.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.2  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   8.2  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   8.2  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 258 SSGMSFLKSPETASQGDVSKKHPIKAFRESI 166
           S G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 113 SRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 289 AQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 378
           A  HL+ R  E ++ KLP+E E F  K++P
Sbjct: 123 ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 191 GCFLETSPC-DAVSGDFKKDIPELWQKHV 274
           GCF+ + P  DA     KK+I ELW+  V
Sbjct: 751 GCFVRSPPKGDATMPVSKKEIAELWKNKV 779


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 92  FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 202
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 56  KMKGFYVLCFALFAAVYCKETYS 124
           ++ G ++LC  L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 128 ENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQ 289
           E+DDLD +  V ++D L +    FL+      +SG+F + +  + +  + +  Q
Sbjct: 523 EDDDLDADICVKDVDRLYSIHAFFLKMKD---ISGEFAERLSVITENFIQSAEQ 573


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 316  LEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAVLNL 465
            LE +KD +P      ++K +  GK FD  L  V  + GN   ++  VLNL
Sbjct: 2628 LEYIKDSVP------RSKRNT-GKMFDDSLELVPENLGNDLKVYFEVLNL 2670


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 510 QETNLIKVQIIHIGEQIQNSGED*KLISLRISDG 409
           +E+NL KV I+    +  +SG D K  +L I DG
Sbjct: 96  EESNLAKVIILKGNGRSFSSGGDIKAAALSIQDG 129


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 200 LETSPCDAVSGDFKKDIPELWQKHVANVLQPRNIYSNVSLKSSRTSYLKN 349
           ++T+P    S    K I +L +    NVL+ R +     L+  R+SY  N
Sbjct: 314 MDTNPSKRFSNPHTKHIMDLVRTQYRNVLRTRELIPEF-LEKIRSSYSNN 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,903
Number of Sequences: 5004
Number of extensions: 49161
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)