Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0246
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    30   1.6  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    29   2.7  
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888...    28   6.3  

>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +2

Query: 134 DDLDIEALVGNIDSLKAFIGCF--LETSPCDAVSGDFKKDIPELWQKHVANVLQPRNIYS 307
           D   ++  +G++D    + G F     S      GD    +  LWQK  A +L    + S
Sbjct: 28  DHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAELLDTMPVIS 87

Query: 308 NVSLKSSRTSY---LKNTKPSKLNTIPKESIS 394
             +LK+ R  +     +  PS+L     +S+S
Sbjct: 88  AGTLKALRLDFPGVNPDNVPSELKLFITKSVS 119


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 251 PELWQKHVANVLQPRNIYSNVSLKSSRTSYLK 346
           PELW+  ++N+LQP  ++   +L  S +S L+
Sbjct: 823 PELWRMWISNLLQPLFVHCQQALDFSWSSLLR 854


>04_02_0031 +
           8874025-8874180,8882152-8882550,8882651-8882987,
           8883234-8884060
          Length = 572

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = -2

Query: 234 SPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSAKHST*KPFIL 55
           SPE   Q +    H I     ++F  +A   R + S+   + +    N +   + +PFI+
Sbjct: 137 SPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEVNPSLPPSFEPFIM 196

Query: 54  NYSLQLIRKIIL 19
           N++++ + + ++
Sbjct: 197 NFNMKNLNRTLI 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,584
Number of Sequences: 37544
Number of extensions: 291157
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)