Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0246
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)             30   1.6  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            29   2.8  
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)                   29   3.7  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
          Length = 641

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 349 YEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAV---LNLLADMNNLY 489
           +    T  DP   HFDA+ + +    G+  L F AV   LN L D + LY
Sbjct: 332 FTGLNTLLDPSMLHFDAVFTGLNTLLGSSMLYFGAVFTGLNTLLDPSMLY 381


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -2

Query: 261 HSSGMSFLKSP---ETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSL 109
           +++G+ ++KS     T +Q D+  K+P +  R  ++PT++    S    + VSL
Sbjct: 344 NTAGLVYMKSGFMNRTVTQADLYNKYPDRPVRLKVYPTQSPAISSDVGGVNVSL 397


>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
          Length = 514

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 236 FKKDIPELWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKPSKLNTIPKESISMLCYP 409
           F  DI   W++   +  + ++I+ +  L  +  ++   T+    +T+P E IS L +P
Sbjct: 185 FNSDIRH-WKRTAGDEYKDKDIWCDGGLHETSLAHRPRTRQRLKSTVPNELISTLLFP 241


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 328 KDKLPQEYEAFKTKYD 375
           KD  PQ+Y+A+K+KYD
Sbjct: 531 KDITPQDYQAWKSKYD 546


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 110  KETYSSENDDLDIEA-LVGNIDSLKAFIGCFLETSPCD 220
            ++T S E+ D  + A ++ N D LK     FLE+SP D
Sbjct: 2393 EKTSSGEDSDAPLLANIISNPDLLKVLKNTFLESSPRD 2430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,209,120
Number of Sequences: 59808
Number of extensions: 343114
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)