Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0246
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83319-3|CAB05905.1|   74|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70753-9|CAA94765.1|  502|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    27   7.5  
AL132943-8|CAB81985.3|  453|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL132943-7|CAC14394.1|  589|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF031834-1|AAC13670.1|  589|Caenorhabditis elegans GLY4 protein.       27   9.9  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   9.9  

>Z83319-3|CAB05905.1|   74|Caenorhabditis elegans Hypothetical
           protein T02D1.7 protein.
          Length = 74

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  MKGFYVLCFALFAAVYCKETYSSENDDLDIEALVGNIDSLKAFIG 193
           M+  ++L  ++ + ++     +  +D  DIEAL+G  D + AF+G
Sbjct: 1   MQFLHILLLSILSLIFISSVQAVPSDQ-DIEALMGLQDQVNAFLG 44


>Z70753-9|CAA94765.1|  502|Caenorhabditis elegans Hypothetical
           protein F40F9.10 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 7/28 (25%), Positives = 21/28 (75%)
 Frame = +2

Query: 233 DFKKDIPELWQKHVANVLQPRNIYSNVS 316
           + ++D+P+ W+KH   ++ P+N +++++
Sbjct: 84  EMQRDLPKKWEKHGDMIVFPQNTFTHIN 111


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 272 HASATAQECPF*NPRKQRRKGMFLRSIQ*RPSENQYFPPKLQYPDRHFPSCMSLYSR 102
           HA+      PF  P  ++ +  ++ S+   P   +Y   +L+ P RH+  C S ++R
Sbjct: 723 HANDCTAMIPFPGPDDEKLRTKWINSMCREPWIYRYLSTRLEKPGRHY-LCASHFNR 778


>U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical
           protein F47B7.2a protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +2

Query: 113 ETYSSENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQP 292
           E Y  E  +   + ++  ++  +AFI  FL  S C   + +F K+  E  Q H+  V +P
Sbjct: 431 EAYKQEKHNTAFKPVIDVLEPFRAFIFHFLSCSEC---AQNFTKE-AEKNQLHL--VTRP 484

Query: 293 RNIYSNV----SLKSSRTSYLKNTKPS-KLNTIPKESISMLCY 406
            ++Y+ +    +  + R S      PS K    P +S+   CY
Sbjct: 485 EDVYAWLWRVHNFVNKRLSGSLTDDPSFKKQQFPPKSLCADCY 527


>U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical
           protein F47B7.2c protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +2

Query: 113 ETYSSENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQP 292
           E Y  E  +   + ++  ++  +AFI  FL  S C   + +F K+  E  Q H+  V +P
Sbjct: 431 EAYKQEKHNTAFKPVIDVLEPFRAFIFHFLSCSEC---AQNFTKE-AEKNQLHL--VTRP 484

Query: 293 RNIYSNV----SLKSSRTSYLKNTKPS-KLNTIPKESISMLCY 406
            ++Y+ +    +  + R S      PS K    P +S+   CY
Sbjct: 485 EDVYAWLWRVHNFVNKRLSGSLTDDPSFKKQQFPPKSLCADCY 527


>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +2

Query: 113 ETYSSENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQP 292
           E Y  E  +   + ++  ++  +AFI  FL  S C   + +F K+  E  Q H+  V +P
Sbjct: 431 EAYKQEKHNTAFKPVIDVLEPFRAFIFHFLSCSEC---AQNFTKE-AEKNQLHL--VTRP 484

Query: 293 RNIYSNV----SLKSSRTSYLKNTKPS-KLNTIPKESISMLCY 406
            ++Y+ +    +  + R S      PS K    P +S+   CY
Sbjct: 485 EDVYAWLWRVHNFVNKRLSGSLTDDPSFKKQQFPPKSLCADCY 527


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 292 QKHLFKRFLEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVA 417
           +K +  +   + K  L +  E +K KYD   +H+D + S+VA
Sbjct: 158 KKQVDDKIQALEKAALKKNDELYKEKYDEITRHYDRIRSSVA 199


>AL132943-8|CAB81985.3|  453|Caenorhabditis elegans Hypothetical
           protein Y116F11B.12b protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 137 DLDIEALVG-NID-SLKAF-IGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQPR-NIY 304
           DLD+E   G N++ S + +  G  LE  PC  V   F+K  P  +     NV Q      
Sbjct: 340 DLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFRKKHPYTFPGGSGNVFQKNTRRA 399

Query: 305 SNVSLKSSRTSYLKNTKPSK 364
           + V +   +  YLKN   ++
Sbjct: 400 AEVWMDEYKAIYLKNVPSAR 419


>AL132943-7|CAC14394.1|  589|Caenorhabditis elegans Hypothetical
           protein Y116F11B.12a protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 137 DLDIEALVG-NID-SLKAF-IGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQPR-NIY 304
           DLD+E   G N++ S + +  G  LE  PC  V   F+K  P  +     NV Q      
Sbjct: 340 DLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFRKKHPYTFPGGSGNVFQKNTRRA 399

Query: 305 SNVSLKSSRTSYLKNTKPSK 364
           + V +   +  YLKN   ++
Sbjct: 400 AEVWMDEYKAIYLKNVPSAR 419


>AF031834-1|AAC13670.1|  589|Caenorhabditis elegans GLY4 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 137 DLDIEALVG-NID-SLKAF-IGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQPR-NIY 304
           DLD+E   G N++ S + +  G  LE  PC  V   F+K  P  +     NV Q      
Sbjct: 340 DLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFRKKHPYTFPGGSGNVFQKNTRRA 399

Query: 305 SNVSLKSSRTSYLKNTKPSK 364
           + V +   +  YLKN   ++
Sbjct: 400 AEVWMDEYKAIYLKNVPSAR 419


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
            complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +1

Query: 292  QKHLFKRFLEVVKDKLPQEYEAFKTKYDP 378
            +KH+F+ + ++++D +   Y   +T ++P
Sbjct: 956  EKHIFETWEDIIQDAIASSYAQRRTSFEP 984


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,672
Number of Sequences: 27780
Number of extensions: 267150
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)