Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0245
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    44   1e-06
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    36   3e-04
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.4  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = +1

Query: 292 LPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFH 471
           L R E F        + A K+ R+   A+  D  +  A + R+R+N  +F YAF+ A  H
Sbjct: 74  LGRHENFSLFIPKHRKVAGKLIRIFLAAESIDDLLSNAVFCRDRVNPYLFYYAFSVALLH 133

Query: 472 RTDCKGLYLPA 504
           R D + L LP+
Sbjct: 134 RPDTQNLDLPS 144



 Score = 28.3 bits (60), Expect = 0.074
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 675 LSQNDVMSYFIEDVDLNTYMYYLHMNYPF 761
           L +   ++Y+ ED+ LN + ++ H+ YPF
Sbjct: 188 LDEEHRVAYWREDIGLNLHHWHWHLVYPF 216


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 376 KDFDVFMRTACWMRERINGGMFVYAFTAACFHRTDCKGLYLPAPSRSIP 522
           ++ D  +  A + R+R+N  +F YA + A  HR D + + LP+   S P
Sbjct: 102 RNVDDLLSVAVYARDRVNPYLFSYALSVAILHRQDTQDIDLPSFIESFP 150



 Score = 29.1 bits (62), Expect = 0.042
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 675 LSQNDVMSYFIEDVDLNTYMYYLHMNYPF 761
           L +   ++YF ED+ +N + ++ H+ YPF
Sbjct: 188 LEEEHRLAYFREDLGINLHHWHWHLVYPF 216



 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 602 PEDRVLGGFSHLHHKGFTDDMAVNEEVGIDLEGAGR 495
           P   V   F+HL H+ FT  + VN +   + +G  R
Sbjct: 466 PRGSVFVRFTHLQHQPFTYKITVNNQSNGNRKGTCR 501


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 444 DEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFF 337
           D   ++ P + P R P +N + L  +E S +  G F
Sbjct: 125 DMETTLTPCASPNRKPDDNQDHLRRLEMSLEKSGLF 160


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 119 DMKMKELCIMKLLDHI 166
           D K+  LC+  L+DH+
Sbjct: 442 DEKLNALCMTWLMDHV 457


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,784
Number of Sequences: 336
Number of extensions: 3313
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)