Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0245
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   3.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   7.0  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.3  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   9.3  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.3  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   9.3  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.3  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 408 LDERKDQRRHVRLRFYCRVLPQNRLQGSLPARS 506
           LDER +  R++R   Y + L +  ++  LP RS
Sbjct: 69  LDERSEMVRYLRASGYAKFLEKYLIEEELPVRS 101


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 89   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 223
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 701 IGHNIVLG*RAADSLTPVN--HYQIVVSNRDAVVFPEDRV 588
           IG  IVL    A + TP+   HY  V + R+ V+ PEDR+
Sbjct: 374 IGIGIVL----AGACTPIIYVHYNRVYTRRNGVMSPEDRL 409


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 612 GITVTDDNLVVIDWRKGVRRSLSQNDVMSYFIEDV 716
           G + T  N  ++DW + V+++ +  D++   +ED+
Sbjct: 354 GTSATLFNSFLLDWNENVKKNDTYYDILHAILEDL 388


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 600 WKYY-GITVTDDNLVVIDWR 656
           W Y  GI V DD + + DWR
Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 110 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 217
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 612 GITVTDDNLVVIDWRKGVRRSLSQNDVMSYFIEDV 716
           G + T  N  ++DW + V+++ +  D++   +ED+
Sbjct: 354 GTSATLFNSFLLDWNENVKKNDTYYDILHAILEDL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,876
Number of Sequences: 5004
Number of extensions: 55737
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)