Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0245
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    30   2.4  
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    29   3.2  
04_01_0249 - 3284107-3286377                                           28   7.3  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    28   9.7  

>02_02_0492 -
           10907529-10907629,10907714-10907953,10908035-10908098,
           10908416-10908721,10909347-10909561,10909656-10909950,
           10910493-10910597,10911112-10911180,10911433-10911519,
           10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 217 HREKLRQVHECRCVKQFMEMYKMG-MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVF 393
           HRE+  +V E  C+K+ ME+  +G     GE  ++ +  Q ++ +++ R LY  +D D+F
Sbjct: 630 HRERYEKVLEACCLKKDMEILPLGDQTIIGERGINLSGGQ-KQRMQIARALY--QDADIF 686

Query: 394 M 396
           +
Sbjct: 687 L 687


>02_02_0490 -
           10879761-10879861,10879946-10880185,10880274-10880337,
           10880426-10880731,10881098-10881312,10881417-10881711,
           10882193-10882357,10882477-10882527,10882657-10883109,
           10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 217 HREKLRQVHECRCVKQFMEMYKMG-MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVF 393
           HRE+  +V E  C+K+ +E+  +G     GE  ++ +  Q ++ +++ R LY  +D D+F
Sbjct: 453 HRERYEKVLEACCLKKDLEILPLGDQTIIGERGINLSGGQ-KQRIQIARALY--QDADIF 509

Query: 394 M 396
           +
Sbjct: 510 L 510


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = +2

Query: 128 MKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDALSSSWR 274
           + +L + ++LD+  +PT +    +   +YN+   C +Y + +A + +W+
Sbjct: 365 VSDLNLFRILDNNKKPTRYRMWSQTIGQYNLLHECTRYES-EARTKNWK 412


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 191 IKEIAKEYNIEKSCDKYMNVDALSSSWRCIRWAC 292
           ++++AK   ++K  +  +N D L + W C+R  C
Sbjct: 168 VQKLAKYRFLKKQSELLLNADDLDAMWVCLRENC 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,054,815
Number of Sequences: 37544
Number of extensions: 408583
Number of successful extensions: 1074
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)