Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0245
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.4  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   7.5  
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               28   9.9  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 289 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 459
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 460 A 462
           +
Sbjct: 280 S 280


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 400 TACWMRERINGGMFVYAFTAACFHR 474
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -2

Query: 356 KTLTASSIWSSL--VWTKV---SPRGSMPILYISMNCLTHRHSCTCRNFSRCY 213
           K+L  SS   SL   W +V    P+   P      +C++H  S  C+ F  CY
Sbjct: 119 KSLATSSSVPSLPPTWMRVFTFRPQEKQPYQCACSDCMSHDGSLGCQTFHGCY 171


>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 241 HECRCVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMR 399
           H+ RCVK+ ++  +    P+ E    T     E+  +VF+   YAK+FD  M+
Sbjct: 350 HKQRCVKRTVD--RATAPPKPEKEKKTGSFPCEKCPRVFK---YAKNFDAHMK 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,192,528
Number of Sequences: 59808
Number of extensions: 451178
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)