Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0245
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U21308-14|ABB88222.1|  429|Caenorhabditis elegans Tryptophan hyd...    28   8.7  
U21308-13|ABB88221.1|  532|Caenorhabditis elegans Tryptophan hyd...    28   8.7  
AF135186-1|AAD30115.1|  532|Caenorhabditis elegans tryptophan hy...    28   8.7  

>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 645 IDWRKGVRRSLSQNDVMSYFIEDVDLNTYMYYLHM 749
           ++W++   + L  N+V     E VD ++YM YL M
Sbjct: 183 VEWKEAYEKKLEDNNVQGNLKEIVDQSSYMDYLRM 217


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 405 RSPHENIEVLSVVEDSEDFD 346
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +2

Query: 89  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDALSSS 268
           +F K+  V     M+    + ++ HI QP    ++  I    N+E +      + + +S 
Sbjct: 68  LFIKKDQVTPRPIMRRSTQLSIIHHIRQPCQ-SNVPRICDAPNLETTATSTTKLFSWNSQ 126

Query: 269 WRCIR 283
           W C+R
Sbjct: 127 WTCLR 131


>U21308-14|ABB88222.1|  429|Caenorhabditis elegans Tryptophan
           hydroxylase protein1, isoform b protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +1

Query: 130 EGALHHEAA*PYPPADHV*GHQGDRQGV*HREKLRQVHECRCVKQFMEMYKMGMLPRGET 309
           E AL+++   P P  ++    +    G+ +R KLR++H+    KQF++ ++  +L R   
Sbjct: 127 ELALNYKHGEPIPRTEYT-SSERKTWGIIYR-KLRELHKKHACKQFLDNFE--LLERHCG 182

Query: 310 FVHTNELQMEEAVKVFR 360
           +   N  Q+E+  K  +
Sbjct: 183 YSENNIPQLEDICKFLK 199


>U21308-13|ABB88221.1|  532|Caenorhabditis elegans Tryptophan
           hydroxylase protein1, isoform a protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +1

Query: 130 EGALHHEAA*PYPPADHV*GHQGDRQGV*HREKLRQVHECRCVKQFMEMYKMGMLPRGET 309
           E AL+++   P P  ++    +    G+ +R KLR++H+    KQF++ ++  +L R   
Sbjct: 230 ELALNYKHGEPIPRTEYT-SSERKTWGIIYR-KLRELHKKHACKQFLDNFE--LLERHCG 285

Query: 310 FVHTNELQMEEAVKVFR 360
           +   N  Q+E+  K  +
Sbjct: 286 YSENNIPQLEDICKFLK 302


>AF135186-1|AAD30115.1|  532|Caenorhabditis elegans tryptophan
           hydroxylase protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +1

Query: 130 EGALHHEAA*PYPPADHV*GHQGDRQGV*HREKLRQVHECRCVKQFMEMYKMGMLPRGET 309
           E AL+++   P P  ++    +    G+ +R KLR++H+    KQF++ ++  +L R   
Sbjct: 230 ELALNYKHGEPIPRTEYT-SSERKTWGIIYR-KLRELHKKHACKQFLDNFE--LLERHCG 285

Query: 310 FVHTNELQMEEAVKVFR 360
           +   N  Q+E+  K  +
Sbjct: 286 YSENNIPQLEDICKFLK 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,716
Number of Sequences: 27780
Number of extensions: 321758
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)