Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0244
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 33 0.29
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 30 2.0
03_04_0055 + 16891212-16891848,16893166-16893206 29 2.7
02_02_0712 + 13200174-13200761,13201966-13202616 29 2.7
01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151 29 2.7
08_02_0311 - 15635165-15635590,15635777-15638698 29 3.5
03_05_0314 - 23035295-23036342,23036552-23036616 29 3.5
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 4.7
09_04_0569 + 18600750-18602117 28 6.2
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 8.2
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 8.2
>05_01_0214 - 1615519-1616775
Length = 418
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 524 DRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 631
D GH G GH G H H G + H+D++H
Sbjct: 183 DHGH-GHGHGHGHGHSHDHDHGGSDHDHHHHEDQEH 217
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 515 HQQDRGHLGDGHDEGRSHLP----GLGHAGQEDLQRRHDDEQHDE 637
H ++ H + DE + GLG ++DL++ HD E DE
Sbjct: 166 HGMEKDHTKEEKDESNKEMDDSEKGLGKEEKDDLEKDHDKEDRDE 210
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +2
Query: 512 EHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 637
+ QQ H+ G G H PG G G +DE DE
Sbjct: 179 QQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHDEDEDEDE 220
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 498 FSVDHYVSELHVVSEEARHVNRSVKWISERHGG 400
++ +HY+ + +R NRSV W+ HGG
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGG 349
>01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151
Length = 555
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 10 GTIIETVPLPGSGIGTGFPFQLYVQ-TGQRKEHHRP*LHGYARI 138
G ++ +VP+ + G G P +LY + QR+ H R L R+
Sbjct: 467 GQVVSSVPIVATSDGLGIPSELYERMESQRRRHERVSLEVQVRL 510
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 512 EHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 634
EH + + D +G+ HLPG G G + L R+ + + D
Sbjct: 184 EHYKIGEYADDDPHDGKLHLPGPGGGGNKSLLARNQNGEFD 224
>03_05_0314 - 23035295-23036342,23036552-23036616
Length = 370
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 256 VLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATD 110
V+RE + + P+ H +A+SG S KV+WD +++ TD
Sbjct: 5 VIRELRSLMTTPLHLHLIALSGSEFNHVDGIESAKVIWDTLRNMYEGTD 53
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 243 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 136
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>09_04_0569 + 18600750-18602117
Length = 455
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 311 TMTYICISK--PPIVPRGSISSEGIRCETCTTSP*PLSGHLRKASFRFPLHDES 156
T+T +S+ PP+ P S S+ C ++ P L GH R R ES
Sbjct: 168 TLTDFDLSRLLPPVSPSASTSTSSSSCSATSSPPPQLQGHGRSQLRRIFARSES 221
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -3
Query: 272 PRGSISSEGIRCETCTTSP*PLSGHLRKASFRFPLHDESKGTLG*ILAYPWSYGR 108
P+GS+ E I S + + + S H ++G +G ++ + W +GR
Sbjct: 484 PKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLHDWGFGR 538
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 220 VLDHCLAISGRHHFAFHYTTSRKVLWDKS 134
VLD + HH A YT S + LW S
Sbjct: 705 VLDRATELLTDHHAAASYTVSNRTLWQAS 733
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,210,384
Number of Sequences: 37544
Number of extensions: 478926
Number of successful extensions: 1548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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