Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0244
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              29   3.6  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   28   6.3  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   8.4  

>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 172  GKRNDAFRRWPDNGQGLVVQVSQRIPSELMLPLGT---IGGLEMQ 297
            G  N      P N QG++  VS  +PS L++P G+    GG E Q
Sbjct: 1003 GLANATLTVTPVNSQGVIDSVSINLPSPLLMPTGSYLIFGGKEPQ 1047


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 548 HDEGRSHLPGLGHA-GQEDLQRRHD--DEQH 631
           H+EG+  LPG  H+ GQ  +Q+R +   EQH
Sbjct: 789 HEEGQQQLPGGNHSPGQHHMQQRREALPEQH 819


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -1

Query: 214 DHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQFVHKAGKG 62
           DHCLA  G +H A   T  R       LH    T +G L  D+     G G
Sbjct: 62  DHCLACGGDNHKARFCTLRRSF---TKLHTQNITRNGKLRWDKHTASGGPG 109


>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 264 APRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLH 404
           A R+D   GD DV+ +VA  H        HDHD   + L+L   YL+
Sbjct: 21  ASRHD--HGDGDVKIKVASRHD---PDKRHDHDNDTITLALRSRYLY 62


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 253  LRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIH 122
            LR++  ++   + +H L     HH   +Y  S K+L  ++ H+H
Sbjct: 1567 LRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKILKSRTRHLH 1610


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 512 EHQQDRGHLGDGHDEGR--SHLPGLGHAGQEDLQRRHDDEQHD 634
           +HQQD+ H    H   R   H    GH+  E   RR  D  H+
Sbjct: 429 KHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHE 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,441,360
Number of Sequences: 59808
Number of extensions: 512959
Number of successful extensions: 1368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)