Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0244
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63100.1 68416.m07087 glycine-rich protein                          31   0.73 
At2g29250.1 68415.m03554 lectin protein kinase, putative similar...    29   3.9  
At5g24740.1 68418.m02920 expressed protein                             28   5.2  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    28   5.2  
At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not full...    28   5.2  
At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not full...    28   5.2  
At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g55200.1 68418.m06881 co-chaperone grpE protein, putative sim...    27   9.0  

>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 515 HQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 631
           H    GH   GHD G  H  G GH      +R   D +H
Sbjct: 77  HGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRH 115



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 512 EHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 631
           EH  DRGH   GH  G  H  G GH       R   D  H
Sbjct: 85  EHGHDRGH---GHGRGHGHGHGHGHRRHGRDHRHGRDRGH 121


>At2g29250.1 68415.m03554 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 623

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 375 TTVLHHGHVQCGQEHTGADRRHDDVHLHL-QTSNRTEGQHKF*GNPLRDLHHQSLTIV 205
           T  L+HG ++     +G+ + H   HL L  TS R  GQ  F G P+  L+  S  +V
Sbjct: 27  TKFLNHGFLEANLLKSGSSKIHPSGHLELTNTSMRQIGQ-AFHGFPIPFLNPNSSNLV 83


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 232  VSQRIPSELMLPLGTIGGLEMQMYVIVSPVRTGMLLPTLDMTMMKDRCACR 384
            V Q IP E ++PL  + G    + +    +   +LL   D++  K    CR
Sbjct: 1119 VVQHIPQECVIPLNQVLGRADCLNIFGRDLSVSLLLSESDISTFKKNAVCR 1169


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 450  ARHVNRSVKWISERHGGDT*APATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNR 274
            A+ + ++V  +S  HGG       S T +H G      + +GA   HD  +LH+Q S R
Sbjct: 3209 AQRMQQNVPGVSAGHGGGN---LPSETQIHQG-----SQTSGAVGTHDGGNLHVQESER 3259


>At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +1

Query: 151 PFDSSCNGKRNDAFRRWPDNGQGLV---VQVSQ-RIPSELMLPLGTIGGLEMQMY 303
           P DSS  G  N+A  + P +  GL+   +Q SQ R+P  +  PLG + G++ Q++
Sbjct: 281 PGDSS--GIMNNAMLQQPPHQNGLMPPQMQGSQNRLPHPMQPPLGHMPGMQPQLF 333


>At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +1

Query: 151 PFDSSCNGKRNDAFRRWPDNGQGLV---VQVSQ-RIPSELMLPLGTIGGLEMQMY 303
           P DSS  G  N+A  + P +  GL+   +Q SQ R+P  +  PLG + G++ Q++
Sbjct: 281 PGDSS--GIMNNAMLQQPPHQNGLMPPQMQGSQNRLPHPMQPPLGHMPGMQPQLF 333


>At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containing
           protein / CBS domain-containing protein contains CBS and
           PPR domain repeats
          Length = 580

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/109 (22%), Positives = 41/109 (37%)
 Frame = +1

Query: 16  IIETVPLPGSGIGTGFPFQLYVQTGQRKEHHRP*LHGYARIYPRVPFDSSCNGKRNDAFR 195
           +++ +   GS  G    F   ++     E  RP  H Y  +             RN   R
Sbjct: 309 VVDAMLKCGSTSGALCVFGEILKRSGANEVLRPKPHLYLSMMRAFAVQGDYGMVRNLYLR 368

Query: 196 RWPDNGQGLVVQVSQRIPSELMLPLGTIGGLEMQMYVIVSPVRTGMLLP 342
            WPD+   +   V Q   + LM      G L+  + +++S VR    +P
Sbjct: 369 LWPDSSGSISKAVQQEADNLLMEAALNDGQLDEALGILLSIVRRWKTIP 417


>At5g55200.1 68418.m06881 co-chaperone grpE protein, putative
           similar to chaperone GrpE type 2 [Nicotiana tabacum]
           GI:3851640; contains Pfam profile PF01025: co-chaperone
           GrpE
          Length = 302

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 253 LRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVL 98
           LR S + +  P  +    ++ R H   H T ++ V    SL  HG  D  VL
Sbjct: 16  LRSSFSSVVTPKRNQIPIVASRFHSLVHGTPNKLVAVPVSLRNHGTLDLNVL 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,084
Number of Sequences: 28952
Number of extensions: 351458
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)