Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0241
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.42 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   6.8  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   6.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.8  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 404 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 261
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 43  LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 144
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 362 ICLVNSGNERDSSLLNRRRYL 300
           +CL N    +D  LLNR RY+
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYI 247


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 117 PGPLGQGEHADSFSVARVRPRTSKGI 194
           PG LG    + +  +  V+PRT +G+
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGL 186


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 356  DKSLHQLRTAMHHHPPNQERAVNLSILP 439
            D +LH     + +H  + E A NLSILP
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILP 1088


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,506
Number of Sequences: 5004
Number of extensions: 31122
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)