Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0241
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 2.2
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 2.9
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 3.8
07_03_1107 - 24024387-24024497,24025799-24026410 27 6.7
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 27 6.7
01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136 27 6.7
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 27 8.8
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 8.8
05_06_0282 + 26915249-26915881 27 8.8
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 27 8.8
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 27 8.8
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 55 PRLWGIIANPNPQHEGVSAGCPGL*ARENML 147
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 122 PGQPAETPSCWGLGFAIIPHKRGIPSKR 39
PG+P +TP W + + +P + +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 81 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 185
PQ P F GLP +G +H D ++A P S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 78 KPQSPARRSFSGLPGPLGQGEHADS 152
K ++PA S + PGP G G ADS
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADS 203
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 81 PQSPARRSFSGLPGPLGQGEHADSFS 158
P++P R S SG P P G A SF+
Sbjct: 20 PETPGRGSSSGSPAPGGSASKAVSFA 45
>01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136
Length = 505
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 81 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKG 191
PQ S+ GL P+G+ + AD F +AR+ G
Sbjct: 301 PQKQEGMSYVGLHVPVGRVQAADMFELARLADEYGSG 337
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 130 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPF 2
P G PL+LL GDWG + N+ + K+A T + F
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDF 72
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 424 INSSFLIRWVVVHGRS*LVERFVWLIPVTN 335
+N+S L RW ++ R LV R + L PVT+
Sbjct: 792 VNASGLTRWALLLSRLLLVLRHMLLYPVTH 821
>05_06_0282 + 26915249-26915881
Length = 210
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 355 RQIAPPTKNGHAPPPTESRKS 417
RQ+APP G+ PP T R++
Sbjct: 156 RQLAPPPPMGNPPPNTHRRRT 176
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 81 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKG 191
PQ S+ GL P+G+ + AD F +AR+ G
Sbjct: 461 PQKQEGLSYVGLHVPVGRVQAADMFELARLADEYGSG 497
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 251 EFNTSSVSCATRGRAHLNNDAYLAG 325
E+ S AT GR L+ND+++AG
Sbjct: 875 EYGEEQASTATPGRLLLSNDSHIAG 899
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,805
Number of Sequences: 37544
Number of extensions: 262987
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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