Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0241
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collage...    29   9.4  
M59217-1|AAA51685.1|  584|Homo sapiens alpha-1 type XIII collage...    29   9.4  
AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alph...    29   9.4  
AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alph...    29   9.4  
AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alph...    29   9.4  
AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen prot...    29   9.4  

>M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collagen
           protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  SFMGDNCKPQSPARRSFSGLPGPLG 131
           S +G    P  P  R F G PGP+G
Sbjct: 61  SIIGPRGPPGQPGTRGFPGFPGPIG 85


>M59217-1|AAA51685.1|  584|Homo sapiens alpha-1 type XIII collagen
           protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  SFMGDNCKPQSPARRSFSGLPGPLG 131
           S +G    P  P  R F G PGP+G
Sbjct: 71  SIIGPRGPPGQPGTRGFPGFPGPIG 95


>AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  SFMGDNCKPQSPARRSFSGLPGPLG 131
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


>AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 695

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  SFMGDNCKPQSPARRSFSGLPGPLG 131
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


>AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  SFMGDNCKPQSPARRSFSGLPGPLG 131
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


>AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen
           protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 57  SFMGDNCKPQSPARRSFSGLPGPLG 131
           S +G    P  P  R F G PGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,863,032
Number of Sequences: 237096
Number of extensions: 1442771
Number of successful extensions: 3540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3540
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)