Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0241
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   3.5  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z66521-19|CAA91404.2|  217|Caenorhabditis elegans Hypothetical p...    27   8.0  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    27   8.0  
AL031269-4|CAA20335.2|  217|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF303256-1|AAG50214.1|  217|Caenorhabditis elegans 2L737 protein.      27   8.0  

>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = +3

Query: 69  DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 164
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 43  LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 144
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>Z66521-19|CAA91404.2|  217|Caenorhabditis elegans Hypothetical
           protein VW02B12L.4 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 64  WGIIANPNPQHEGV 105
           WG+IA P PQH+ +
Sbjct: 29  WGMIARPEPQHDSL 42


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 66  GDNCKPQSPARRSFSGLPGPLGQ 134
           GDN +P +P +  F G PG  GQ
Sbjct: 189 GDNGQPGTPGQDGFPGQPGADGQ 211


>AL031269-4|CAA20335.2|  217|Caenorhabditis elegans Hypothetical
           protein VW02B12L.4 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 64  WGIIANPNPQHEGV 105
           WG+IA P PQH+ +
Sbjct: 29  WGMIARPEPQHDSL 42


>AF303256-1|AAG50214.1|  217|Caenorhabditis elegans 2L737 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 64  WGIIANPNPQHEGV 105
           WG+IA P PQH+ +
Sbjct: 29  WGMIARPEPQHDSL 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,011,024
Number of Sequences: 27780
Number of extensions: 196026
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)