Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0241
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.34 
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    28   2.4  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    28   3.2  
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    27   7.4  
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    27   7.4  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   7.4  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   7.4  
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD...    26   9.8  
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD...    26   9.8  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 69  DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 197
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 39  ALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGI 194
           AL +  SF GDN  PQS   +++   P     G H       + +PR   G+
Sbjct: 141 ALLKMKSFDGDNSNPQSSWSKTYK--PTSSNGGHHFAVVRTTKGKPRRYNGV 190


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 200 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 51
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 48  RNSSF-MGDNCKPQSPARRSFSGLPGPLGQGEHADSFS 158
           RN S   G +CK   P   +  G+  PL +G +  SFS
Sbjct: 205 RNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFS 242


>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 395 GGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRN 273
           G  W  L  G + L+ S NER SSL N +  LGVR  + ++
Sbjct: 231 GYVW-LLTDGVMNLLKS-NERGSSLENMQGVLGVRSHIPKS 269


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 362 SLHQLRTAMHHHPPNQERAV 421
           S HQ RT  HHHP N    V
Sbjct: 19  SRHQRRTKSHHHPLNPPNPV 38


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 359 KSLHQLRTAMHHHPPNQERAVNLSILP 439
           K LH L +  H H PN +  +NL   P
Sbjct: 104 KLLHGLNSHSHRHSPNSQSDLNLDQTP 130


>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 279

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 383 PFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLV 282
           P+LV   +C++    +R  S++N     G+RG++
Sbjct: 136 PWLVSKHVCMLMRDAKRGGSVINISSIAGIRGML 169


>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 280

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 383 PFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLV 282
           P+LV   +C++    +R  S++N     G+RG++
Sbjct: 137 PWLVSKHVCMLMRDAKRGGSVINISSIAGIRGML 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,262
Number of Sequences: 28952
Number of extensions: 185421
Number of successful extensions: 434
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)