Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0238
         (561 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YGU5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q23W34 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q239F6 Cluster: Leucine Rich Repeat family protein; n=1...    33   6.0  
UniRef50_Q6JCT7 Cluster: NADH dehydrogenase subunit 6; n=1; Aleu...    32   8.0  

>UniRef50_Q4YGU5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 207

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = -3

Query: 553 LKYLQT*TIKMYIRK*QSMKYYNTVKAVTRIKG*KNAIGMLKYYNINKLCIKFIEDTQLT 374
           LKY Q   + ++I    S  +Y        +K   + +    Y NI K C K I + ++ 
Sbjct: 13  LKYYQDCIVNIFINY-LSANFYKDKNCENNVK---HCLYSFSYLNIGKECFKSIINNKIN 68

Query: 373 KTTTCYIASLFK*RPLTFRTFIIQISNKVN 284
           K T  YI+++ + +      F + I N  N
Sbjct: 69  KHTHAYISNIKELKQNVKENFFLIIQNCKN 98


>UniRef50_Q23W34 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1397

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 177  RDLYWLFYYL*HYCPNGLLVLLMVNK*INKYTFLMFF 67
            R L +LFY L    P  + +L+ +N  IN YTFL  F
Sbjct: 1001 RSLQFLFYLLNSIQPTAMFLLIKINIPINFYTFLSLF 1037


>UniRef50_Q239F6 Cluster: Leucine Rich Repeat family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Leucine Rich Repeat
            family protein - Tetrahymena thermophila SB210
          Length = 1996

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 26   FLWYYLLTNLPTMAKNIKKVYLFIYLFTIRRTNSPL 133
            FL Y  L+N P +  +I K+YLF++LF IR  NS L
Sbjct: 1443 FLEYIDLSNNPFIT-SIGKIYLFLHLFDIRFDNSKL 1477


>UniRef50_Q6JCT7 Cluster: NADH dehydrogenase subunit 6; n=1;
           Aleurodicus dugesii|Rep: NADH dehydrogenase subunit 6 -
           Aleurodicus dugesii (Doogie Howzer whitefly)
          Length = 138

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 386 VFNKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIFH*LLFSN----IHFYCSCL*VLQ 553
           +FN L    + II +    CI++ F  + CFYS V+F  LLF +    I  Y  C+ +L+
Sbjct: 1   MFNPL-IMLLFIIFYLIFICIYIYFLVKTCFYSYVLF--LLFMSGLMIIFMYLCCIVILE 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,263,297
Number of Sequences: 1657284
Number of extensions: 7571388
Number of successful extensions: 19128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19117
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)