Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0238
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    28   4.0  
AC024751-14|AAK21511.2|  151|Caenorhabditis elegans Hypothetical...    28   5.3  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    27   9.2  
U39999-2|AAK93856.1|  296|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 389 FNKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIFH*LLFSN 517
           + K N QFI  ++F  S  +   FYS+ CF   + F    F N
Sbjct: 4   YRKKNGQFIFCLIFMCSSPLKKIFYSKTCFTHFLSFLFQFFLN 46


>AC024751-14|AAK21511.2|  151|Caenorhabditis elegans Hypothetical
           protein Y18H1A.8 protein.
          Length = 151

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 495 FIDCYFRIYIFIVHVCRYFNKF 560
           F+D YF +Y+ IVH C    K+
Sbjct: 79  FLDSYFELYMIIVHDCTDNGKY 100


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 353 YIACCSFSQLSVF--NKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIF 496
           +  C S   +++F  N +  QF+   +  H   + L FYS   F+  +IF
Sbjct: 257 HFLCTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLVFYSASTFFIYLIF 306


>U39999-2|AAK93856.1|  296|Caenorhabditis elegans Hypothetical
           protein F41G3.6 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 RYIACCSFSQLSVFNKLNAQFINIIVFKHS 439
           RY++ CS  QLS+  + N  F  + VF  S
Sbjct: 136 RYLSQCSLDQLSIDERANVLFAILRVFSDS 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,345
Number of Sequences: 27780
Number of extensions: 193711
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)