Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0237
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0622 - 4625246-4627759 32 0.26
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540... 30 0.81
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667... 28 3.3
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 27 7.5
04_03_0201 - 12586324-12587131,12590080-12591512 27 7.5
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522... 27 10.0
06_01_1166 + 9931955-9933406 27 10.0
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 10.0
>07_01_0622 - 4625246-4627759
Length = 837
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -2
Query: 338 PITLPLYPQAMRLPEVSSVLDSVKALLYHGCRC 240
P+TLPLYPQ+M + S+ D +A L H C C
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACL-HDCAC 427
>06_01_0733 +
5405889-5405922,5405923-5405975,5406430-5406543,
5407464-5407523,5408139-5408217,5410661-5410728,
5411198-5411302,5411887-5411994,5412087-5412279,
5412818-5412897,5413309-5413536,5414112-5414252,
5414341-5414466,5414561-5414611,5414879-5414956,
5415814-5415960,5416685-5417179
Length = 719
Score = 30.3 bits (65), Expect = 0.81
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 465 EYQKSVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMFGTSDHSTIV 319
E + S + N+ L+ VG RE+ +L TP V TSDH I+
Sbjct: 338 EQRMSDYMLAENVPANLLCVGHREFPSDSLPVQETPLVSRKTSDHVDIL 386
>07_03_1566 +
27766336-27766393,27766480-27766609,27766728-27766797,
27767134-27767196,27767741-27767815,27768035-27768154,
27768508-27768549,27768651-27768725,27768909-27769055,
27769165-27769302,27769448-27769562,27769658-27769746,
27770062-27770184
Length = 414
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 65 ENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYI 244
E F TE+ + L NP +A + VD+ R Y+ PAKY L ++
Sbjct: 159 ERRTFLFSATMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHV 218
Query: 245 YNR 253
N+
Sbjct: 219 LNK 221
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 139 VSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADF 35
V+ DSQYQI+ T +Q D+ Q+ EL F
Sbjct: 678 VNADSQYQIVTTAELQPSAEDISEEKQTMELITQF 712
>04_03_0201 - 12586324-12587131,12590080-12591512
Length = 746
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 131 GTNPNGDHMAFGVNSVDSFRAQWYLQP 211
G +P+G H+ +N+VDS R + + P
Sbjct: 182 GWDPSGRHVGVDINNVDSRRGNYVVLP 208
>09_06_0055 -
20550889-20551531,20551612-20551889,20552035-20552203,
20552397-20552534,20553945-20553997,20554521-20554574,
20556062-20556295,20556399-20556986,20557065-20557419,
20557494-20557694,20557925-20557998,20558114-20558254,
20558611-20558670,20558750-20558806,20559281-20559318,
20559419-20559578
Length = 1080
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +2
Query: 35 KVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQ---WY- 202
+V WK L +FK+ + + VLG+G NP+ D +V + W
Sbjct: 562 RVLWKLGTLPHGLLTFFKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVDYNGNMKPWLE 621
Query: 203 LQPAKYDK 226
L KYD+
Sbjct: 622 LAMTKYDQ 629
>06_01_1166 + 9931955-9933406
Length = 483
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 217 FSGLQVPLGSETIDAVDSEGHVVAV 143
F+GL+ PLGS D D+ VVAV
Sbjct: 101 FAGLRGPLGSWARDRADTHHRVVAV 125
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 53 IALWE-NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVD 181
+ LW+ N +++ + + V V P+G H+A G+NS D
Sbjct: 3076 VYLWDATNSSTSELVTVDEDNGPVTSVSWAPDGRHIAVGLNSSD 3119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,951
Number of Sequences: 37544
Number of extensions: 251657
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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