Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0236
         (468 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   1.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   4.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   5.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   9.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   9.9  

>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 176 VDSFRAQWYLQPAKYDKDNLF 238
           +D+ R  W    AKYDKD ++
Sbjct: 94  IDNKRDWWNELEAKYDKDGVY 114


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 341 LPITLPLYPQAMRLPEVSSVLDSVKALLYHGCRCRTNCL 225
           LP+T      A  L E+    +S+ +L + G   R  CL
Sbjct: 358 LPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCL 396


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 164 GVNSVDSFRA 193
           GVNS DSF+A
Sbjct: 26  GVNSADSFKA 35


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 375 KCLNTPSVMFGTSDHSTIVSPGHAVTRGFKRPRQCQS 265
           +CL+ P    GT D   +V+  H   +     R C+S
Sbjct: 301 ECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCES 337


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 141 RTATTWPSESTASIVSEPSGT 203
           R  T W + + ASI  +PS +
Sbjct: 5   RLVTLWLAFNLASIAQDPSAS 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,567
Number of Sequences: 336
Number of extensions: 2327
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)