Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0236
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.35 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   0.82 
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   4.4  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   5.8  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    25   5.8  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 38  VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 148
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 23  KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 139
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 121 YQILVTLSVQDLEVDLVVLPQSNELPADF 35
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 449 YFIFQIIFHCYSFWL 405
           YFI  +IF  YSFW+
Sbjct: 492 YFISALIFTSYSFWI 506


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 89  ILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQP 211
           +++T  +Q+L +G    P     AFGVNS+   +A  +  P
Sbjct: 813 LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMP 853


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 280 RTLETSGNRMAWGYNGRVIGSPEHYAWGVKAF 375
           +TL   G+   +GY   +   P HY + +  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,058
Number of Sequences: 5004
Number of extensions: 40602
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)