Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0236
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    27   5.1  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    27   8.9  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    27   8.9  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    27   8.9  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    27   8.9  

>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 74  KVYFKILNTERNQYLVLGVGTNPNGDH 154
           + YF++L+ E N+Y+++    N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182


>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 335 ITLPLYPQAMRLPEVSSVLDSVKALLYHGCRCRTNCLCR 219
           + + +YP    LP +  + D  +ALLY+  R +    C+
Sbjct: 292 LCIAIYPAIDPLPNIFIIRDYRRALLYYVLRVKNKLFCK 330


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
            6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 119  VLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLF 238
            +L V T P G + A+G ++      +WYL PA+  KD  F
Sbjct: 1030 ILEVATIPEG-YYAYGASA----GREWYLNPAQQFKDRSF 1064


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
            6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 119  VLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLF 238
            +L V T P G + A+G ++      +WYL PA+  KD  F
Sbjct: 1067 ILEVATIPEG-YYAYGASA----GREWYLNPAQQFKDRSF 1101


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative trehalose
            6-phosphatesynthase protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 119  VLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLF 238
            +L V T P G + A+G ++      +WYL PA+  KD  F
Sbjct: 1067 ILEVATIPEG-YYAYGASA----GREWYLNPAQQFKDRSF 1101


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
            trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 119  VLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLF 238
            +L V T P G + A+G ++      +WYL PA+  KD  F
Sbjct: 1067 ILEVATIPEG-YYAYGASA----GREWYLNPAQQFKDRSF 1101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,907,280
Number of Sequences: 27780
Number of extensions: 221193
Number of successful extensions: 480
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)