Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0236
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.24 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   2.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   5.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   5.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect(2) = 0.24
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 217 FSGLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVT 104
           ++ L+ P+G+E+   V S G  +   +  D + Q+L+T
Sbjct: 35  YNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72



 Score = 21.4 bits (43), Expect(2) = 0.24
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 364 HPKRNVRDFRSLYHCIPRPCG 302
           H KR + D    Y+ + RP G
Sbjct: 23  HEKRLLNDLLDTYNVLERPVG 43


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
 Frame = +2

Query: 86  KILNTERNQYLVLGVGTNPNG-------DHMAF---GVNSVDSFRAQWYLQPAKYD-KDN 232
           ++ NT+RN+YL+     N N        +H+ F   G N  D  R     + A +D +DN
Sbjct: 366 RVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRNS---RCANFDNQDN 422

Query: 233 LFYIYNRDTAR 265
             Y +N + AR
Sbjct: 423 NHYNHNHNQAR 433


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 233 NCLCRI*RAAGTTGL 189
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 233 NCLCRI*RAAGTTGL 189
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 77  VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 172
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 77  VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 172
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 77  VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 172
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 268 LTLSRTLETSGNRMAWGYNG 327
           L L +TL+   NR++  YNG
Sbjct: 453 LALLKTLDLGENRISNFYNG 472


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 145 VRVSTDSQYQILVTLSVQDLEVDL 74
           + V+T ++   LVTLSVQ L  ++
Sbjct: 172 IAVNTTTEKGALVTLSVQLLSCEV 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,347
Number of Sequences: 438
Number of extensions: 3239
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)