Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0233
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.44 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.44 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.5  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 251 YNRKFNDPIEINLKENSNDEQQLFGELTRTDVNFEHYGWNFEPL*AKISHESNVFVGNQ 75
           YN+  N P   N   + N  Q   GE      N+ HYG+++     +++H  N  +G++
Sbjct: 361 YNK--NHPNSENYINHQNYVQGYQGE----HPNYNHYGYHYSGDGGEVAHLPNTHMGHE 413


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 251 YNRKFNDPIEINLKENSNDEQQLFGELTRTDVNFEHYGWNFEPL*AKISHESNVFVGNQ 75
           YN+  N P   N   + N  Q   GE      N+ HYG+++     +++H  N  +G++
Sbjct: 309 YNK--NHPNSENYINHQNYVQGYQGE----HPNYNHYGYHYSGDGGEVAHLPNTHMGHE 361


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +2

Query: 335 AY*WLNTIGILFAEFKVG 388
           AY W++++G+   ++ +G
Sbjct: 132 AYLWISSVGVRMFQYYIG 149


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 189 LLIIAVLFEVNLDRIVKLAIVN*KNISDVAAFLSGTKYHWNLSLLALSEPI 341
           L II + F + L  ++ L  +  KN+   AA L   K+  N+SL A  + +
Sbjct: 239 LTIIFLFFIIPLIILLILYCIIAKNLMSNAATLVLNKHIDNISLRARKQVV 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,000
Number of Sequences: 336
Number of extensions: 2512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)