Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0233
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 27 1.8
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 27 2.4
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 2.4
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 26 3.2
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 3.2
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 5.6
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 7.4
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 7.4
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 9.8
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.8
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 25 9.8
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.8
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 281 CRYVGDIFLIYNRKFNDPIEI 219
C Y GDIFL RK D I++
Sbjct: 880 CEYSGDIFLTIQRKLQDLIDL 900
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 287 VGHQIPLESFAAGSVRAY*WLNTIGILFA--EFKVGIGVRIPN-FEVELVALPQWLEY 451
VG Q+PL S AA S+R Y +FA E+ + IPN F + A W+ Y
Sbjct: 250 VGEQLPLPSSAAASLRGY-------SVFAPGEYTYNFDLAIPNCFPESVEAKMGWVRY 300
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -1
Query: 436 WESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSD 329
W + + +WN + Y+ FG+++ + IQ + D
Sbjct: 245 WIPIENFTSLWNTGAPKYISFGDENNSDIQTAVDYD 280
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 263 IFLIYNRKFNDPIEINLKENSNDEQQLFGELTRTDVNFEH 144
+ L N++ D IEIN K+ ++QL +L+ EH
Sbjct: 310 VLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEH 349
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 526 FNKADTGQNKAIINISDNTNVRSSWVFKP 440
F AD G+NK + +V + W+FKP
Sbjct: 94 FTYADFGKNKNLFQDFSIESVPNFWIFKP 122
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 203 SNDEQQLFGELTRTDVNFEHYGWN 132
+NDE++++GE T V ++ Y +N
Sbjct: 88 ANDEEEIWGEETNESVVYKEYTYN 111
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/53 (20%), Positives = 22/53 (41%)
Frame = -1
Query: 541 REIWLFNKADTGQNKAIINISDNTNVRSSWVFKPLWESNKLYFKIWNADSNSY 383
RE + + Q++ II+ + + W F+ + YF +W + Y
Sbjct: 523 REALSTSDEEWSQHRKIIDTLEGSKKYGKWAFRKMMVKELGYFHVWFSIDGGY 575
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 302 VFGARQKCRYVGDIFLIYNRKFNDPIEINLK 210
+F R CR GDIF + N P+ +++K
Sbjct: 171 LFDRRHHCRRCGDIFCALHCDRNIPLTMDVK 201
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 463 RSSWVFKPLWESNKLYFKI 407
R SW PLW KLY K+
Sbjct: 308 RKSWETYPLWVQVKLYEKV 326
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 505 QNKAIINISDNTNVRSSWVFKPLWESNKLYFKIWNADSNSYLEFGEKDANGIQP 344
QNKA NT V+K + + + F + + D +S L EKD N P
Sbjct: 162 QNKATSVTIRNTPASDFHVYKEFSDDDPIQFPLLSVDGDSPLT--EKDTNLTTP 213
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -1
Query: 412 KIWNADSNSYLEFGEKDANGIQPLIGSDRASSER 311
K+WN N YLE+ I + + + S+R
Sbjct: 15 KLWNDTKNDYLEWERSQQGQISESVVKNHSPSKR 48
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -3
Query: 215 LKENSNDEQQLFGELTRTDVNF--EHYGWNFEPL*AKISHESNVFV 84
L E+ + EL R +N E W FE KIS S F+
Sbjct: 287 LAESDHHSASQIDELVRQSLNVMSEAKSWTFEDTITKISSNSKAFL 332
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 241 SLTILSRLTSKRTAMMSNSFSEN*REP 161
SLT+LS TS + +N EN R P
Sbjct: 44 SLTLLSSFTSSMLELPNNGKEENHRRP 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,885
Number of Sequences: 5004
Number of extensions: 45650
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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