Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0233
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0001 - 10431189-10432634                                         29   3.3  
05_01_0260 - 1993075-1994312,1996249-1997191                           28   4.3  
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     28   5.7  
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147...    27   10.0 

>06_02_0001 - 10431189-10432634
          Length = 481

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 535 IWLFNKADTGQNKAIINISDNTNVRSSWVFKPLWESNKLYFK 410
           I+L NK D G +   ++I     ++ SW+ +PL + NKL+ K
Sbjct: 167 IYLDNK-DAGADVGDVDIPGVRRLKRSWLPQPLLDLNKLFTK 207


>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 440 TVGEQQALLQNLECGLQFLP*IRRKGCQWYSTT 342
           T GE++  ++ +E  LQF+  IR++ CQ +  T
Sbjct: 645 TKGEERPTMKEVEMRLQFVRTIRQRKCQQFPVT 677


>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 416 VELVALPQWLEYPTAPHVSIIRDIYYCLILP 508
           V L +LP++L+ P   HV  I+ +Y+  +LP
Sbjct: 758 VHLDSLPEFLDLPQHIHVLGIKPMYFFTVLP 788


>10_08_0959 -
           21813756-21814097,21814462-21814570,21814688-21814740,
           21814849-21815049,21815320-21815433,21815513-21815671,
           21816490-21816849,21816928-21817149,21817967-21818093,
           21818887-21819023,21819169-21819292,21819665-21820174,
           21820255-21820436,21820812-21820862,21821114-21821266,
           21821339-21821437,21821519-21821861,21821957-21822030,
           21822105-21823025,21823133-21823257,21823419-21823461,
           21823574-21823762,21824814-21825074,21825228-21825387,
           21826200-21826363,21826523-21827009,21827090-21827431,
           21827519-21827836,21828001-21828041,21828136-21828388,
           21829158-21829261,21830198-21830386,21830543-21831196,
           21831320-21831610,21831739-21831882,21832107-21832205,
           21832549-21832657,21832739-21832923,21833008-21833121,
           21833270-21833401,21833483-21833815,21833945-21834436,
           21834773-21834847,21834917-21835066,21835143-21835241,
           21835463-21835547,21837188-21837375,21837513-21837647,
           21837729-21837849,21838127-21838194,21838275-21838370,
           21838450-21838554,21838665-21838980,21839053-21839142,
           21840011-21840181,21840850-21841010,21841088-21841270,
           21841839-21841940,21842515-21842632,21842704-21842798,
           21842972-21843022,21843107-21843241,21843333-21843436,
           21844249-21844414,21844649-21844773,21845220-21845316
          Length = 4181

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 264 ISDVAAFLSGTKYHWN 311
           +SDV+AFL    YHWN
Sbjct: 789 LSDVSAFLVDGDYHWN 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,600
Number of Sequences: 37544
Number of extensions: 256725
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)