Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0233
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)                   28   5.8  
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 412 KIWNADSNSYLE--FGEKDA-NGIQPLIGSDRASS 317
           KIWN D  +Y+E  FG +DA  GI  L   DRA++
Sbjct: 181 KIWNLDEMAYVETLFGHQDAVTGIDSL-SRDRAAT 214


>SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)
          Length = 116

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 484 ISDNTNVRSSWVFKPLWESNKLYFKIWNADSNSYLE 377
           + +  + RS    K L ++NK+  +I+N D+N+Y+E
Sbjct: 5   VKEFNDYRSKMNEKLLADNNKVIKRIFNVDTNAYME 40


>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 98   IHAKFWLIGARNSNRSVQN 154
            +  KFW+IGAR+S+R+ ++
Sbjct: 1237 VRQKFWIIGARSSSRAYRD 1255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,915
Number of Sequences: 59808
Number of extensions: 318830
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)