Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0233
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    31   0.39 
At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190...    29   1.6  
At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ...    29   2.1  
At5g63590.1 68418.m07983 flavonol synthase, putative similar to ...    28   3.6  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    28   3.6  
At2g37420.1 68415.m04589 kinesin motor protein-related                 28   3.6  
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con...    28   3.6  
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr...    28   4.8  
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr...    28   4.8  
At2g34780.1 68415.m04270 expressed protein                             27   8.3  

>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 475 NTNVRSSWVFKPLWESNKLYFKIWNADSNSYLEFGEK--DANGI 350
           +T  RS W++ P  E N LYF     D N+++ FG+K  D+N +
Sbjct: 520 STRWRSLWLWLPCLELNSLYF----PDFNAFVSFGDKFFDSNRV 559


>At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190:
           Protein of unknown function, DUF255
          Length = 818

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 463 RSSWVFKPLWESNKLYFKIWNADSNSYLEFGEKDA 359
           R+S + K   ES K YF + N+    Y+E  EK A
Sbjct: 533 RASKILKAEPESTKYYFPVVNSQPEDYIEVAEKAA 567


>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
           CL21 (RPL21) identical to 50S ribosomal protein L21,
           chloroplast precursor (CL21) [Arabidopsis thaliana]
           SWISS-PROT:P51412
          Length = 220

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 374 EFKVGIGVRIPNFEVELVALPQWLEYPTAPHVSI 475
           +++  IG R PN  + +  +  + EYP +P+V++
Sbjct: 182 KYRRNIGHRQPNTRIRITGITGYEEYPASPNVAV 215


>At5g63590.1 68418.m07983 flavonol synthase, putative similar to
           SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1)
           {Arabidopsis thaliana}; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 308

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 463 RSSWV---FKPLWESNKLYFKIWNADSNSYLEFGEKDANGIQPL 341
           R++WV   F  +W  +++  K W  +   Y+E  E+ A+ I+ L
Sbjct: 97  RNAWVDHLFHRIWPPSRVNHKFWPKNPPEYIEVNEEYASHIKKL 140


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 280  HFCRAPNTTGIFRCWLCPSLLVVEYHWHPFRRI 378
            H C+A N   + RC L P+    ++H  P R++
Sbjct: 1381 HICKAMNELNLIRCKLIPTRPGADWHDLPKRKV 1413


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = -1

Query: 232 ILSRLTSKRTAMMSNSFSEN*RE 164
           ILS+LTSK+TAM+S++ S N RE
Sbjct: 774 ILSKLTSKKTAMISDA-SSNIRE 795


>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; similar to
           S locus F-box (SLF)-S2-like protein (GI:13161528)
           [Antirrhinum hispanicum]
          Length = 392

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 56  KIHLLRVDYQQKHSIHAKFWLIG 124
           KI+ +++D  + + +H KFW++G
Sbjct: 332 KIYSIKIDVIRTNQLHEKFWMLG 354


>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
           transmembrane domains; similar to DNA double-strand
           break repair rad50 ATPase. (Swiss-Prot:O33600)
           [Sulfolobus acidocaldarius]
          Length = 440

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 289 RAPNTTGIFRCWLCPSLLVVEYHWHPFRRIQGRNWSPHSK 408
           +A     +   WL P   V   HW  F+ + G +W  H K
Sbjct: 197 KAKELMEVHGAWLPPWFAV---HWSSFQTVAGTHWDAHGK 233


>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
           transmembrane domains; similar to DNA double-strand
           break repair rad50 ATPase. (Swiss-Prot:O33600)
           [Sulfolobus acidocaldarius]
          Length = 440

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 289 RAPNTTGIFRCWLCPSLLVVEYHWHPFRRIQGRNWSPHSK 408
           +A     +   WL P   V   HW  F+ + G +W  H K
Sbjct: 197 KAKELMEVHGAWLPPWFAV---HWSSFQTVAGTHWDAHGK 233


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = -1

Query: 403 NADSNSYLEFGEKDANGIQPLIGSDRASSERFQWYLVPDKNAATSEIFF*FTIASLTILS 224
           + D    L  GEK       ++G+    SE+ +  + PD+   +S I       +++   
Sbjct: 614 SGDKKKNLPIGEKMGTLQSMIVGTGSRPSEKEETLVPPDRQGGSSAIDI-----TVSKKR 668

Query: 223 RLTSKRTAMMSNS--FSEN*REPMSILNTTVGISS 125
           R++ K+  ++ NS  F+++ + P +I   T  +S+
Sbjct: 669 RVSCKKKIIVQNSLEFNQSGKTPGNIAGKTTCLST 703


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,433
Number of Sequences: 28952
Number of extensions: 225195
Number of successful extensions: 614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)