Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0224
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.42 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   6.9  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 253 ILDKFMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSL 140
           + +  +K  + + +K + R+CFKQ  E+Y ++ K   L
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLKFKLL 564


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 513 ILSTCTFNLLKIMRMVYLLLKHLFV 587
           ILS    N+ ++   VY LL+HLF+
Sbjct: 263 ILSMLELNVSEVTASVYRLLRHLFL 287


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 544 FNKLNVHVDRILYLMILLISS 482
           F + N+HV RI+YL+I+   S
Sbjct: 53  FYRHNIHVPRIVYLIIVACGS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,275
Number of Sequences: 5004
Number of extensions: 43459
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)