Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0224
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_37633| Best HMM Match : DUF327 (HMM E-Value=2.1)                    27   9.6  

>SB_48403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 337 FYVFTYCYIIYTCCINVSGLFLDDRVPKYF 426
           ++ F  CY+   C ++   L  D RV  YF
Sbjct: 257 YFAFVICYLPILCSVSYDALTNDHRVSAYF 286


>SB_37633| Best HMM Match : DUF327 (HMM E-Value=2.1)
          Length = 355

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFK 569
           + NK +N+  S KY++ N CF+
Sbjct: 78  VRNKAFNAIKSAKYKFYNSCFE 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,577
Number of Sequences: 59808
Number of extensions: 280371
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)