Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0224
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    30   1.2  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    27   8.4  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 241 FMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSLMNN 131
           F+K  +F  L WN  Y FK +  F+ +  ++ + + N
Sbjct: 7   FLKLAIFETLFWNLSYIFKHFQNFFGILTQLLATVKN 43


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 101 YENELRFTINSLEFFSVSTRLG 36
           +E  +R TIN++ F S STRLG
Sbjct: 229 FEQVVRETINNISFLSDSTRLG 250


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 101 YENELRFTINSLEFFSVSTRLG 36
           +E  +R TIN++ F S STRLG
Sbjct: 229 FEQVVRETINNISFLSDSTRLG 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,522
Number of Sequences: 27780
Number of extensions: 239942
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)