Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0224
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    28   0.066
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    26   0.35 
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    25   0.46 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.9  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFK 569
           ++NKT ++ +++KY Y N C K
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKK 106


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNK 578
           ++NKT ++ +++KY Y NK
Sbjct: 85  LSNKTIHNNNNYKYNYNNK 103


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 238 MKHFLFRKLKWNFRYCFKQYCEFYQVFFK 152
           M +F  + LK +F   F+QYC  +++  K
Sbjct: 2   MDNFTLQSLKKDFGTYFQQYCLHHKILIK 30


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFKS 566
           ++NKT ++ +++KY Y N  + +
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFKS 566
           ++NKT ++ +++KY Y N  + +
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFKS 566
           ++NKT ++ +++KY Y N  + +
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFKS 566
           ++NKT ++ +++KY Y N  + +
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNN 340


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -1

Query: 634 ITNKTYNSKSSHKYEYTNKCFKS 566
           ++N+T ++ +++KY Y N  + +
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNN 107


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 516 LSTCTFNLLKIMRMVYLLLKHLFVYSY 596
           L++C+F+ L     + + +  +F +SY
Sbjct: 194 LTSCSFDYLTDTNEIRIFVATIFTFSY 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,842
Number of Sequences: 438
Number of extensions: 2879
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)