Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0222
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    27   2.7  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   3.6  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    26   4.7  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   6.3  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.3  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   8.3  

>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 573 DALLREKCTSSRDVKRFTYRAEENERTK 490
           D LL E C     +KRFT R +  ER K
Sbjct: 412 DGLLNENCGEFAGMKRFTARVKVVERLK 439


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 282 KLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRN 410
           +++L+  + +  I NK     LK +LK E+K T + + V LRN
Sbjct: 223 EVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMDAASVELRN 265


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -1

Query: 624 TRTVSRAIVLNPRRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPE 445
           T  ++R I   PRR  RD       +  R   R     E N   +   R H NAR     
Sbjct: 53  TAQMNRVIEQQPRR--RDYFQNNDNSGRRGYNRH----ENNGNAQDVVRSHYNARPDLGY 106

Query: 444 RKR*ISPFV 418
           +KR  SP +
Sbjct: 107 KKRQFSPII 115


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -3

Query: 505 ERTHETNVPSTSERT*TYAREKTMNLSVR 419
           ER  E+++P+ +++   Y ++KT NLS++
Sbjct: 470 ERIIESDLPNNNKQKDRYFKDKTSNLSMK 498


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 281 TTRLGLHSQQPDSKERPSRRDPPSLRAWHPLRENGP 174
           T R  + +    S+     R+P S RA  P R+N P
Sbjct: 150 TQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAP 185


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 210 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 103
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,359
Number of Sequences: 5004
Number of extensions: 54705
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)