Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0222
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 63 3e-10
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 63 3e-10
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 63 3e-10
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 63 3e-10
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_18779| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_6264| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_22121| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_10239| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_42346| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 57 2e-08
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 57 2e-08
SB_36138| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_15035| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_25175| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_49084| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_34898| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013) 29 2.9
SB_52000| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_3203| Best HMM Match : FGF (HMM E-Value=0.013) 28 6.7
SB_9945| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRS-GVNLRNSNE 419
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE KS R G+ L+ +
Sbjct: 729 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKSARQRRLGLGLKGGGK 781
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 66 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 112
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 12 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 58
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 66 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 112
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 65 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 111
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 124 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 170
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 23 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 69
>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +3
Query: 264 QP*AGGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
QP GGKLHL+LN+ RPIANKYREGK+K TLKRE K
Sbjct: 40 QPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELK 76
>SB_18779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 44
>SB_6264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 44
>SB_22121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRNSN 416
GGKLHL+LN+ RPIANKYREGK+K TLKRE K RS + R+SN
Sbjct: 2 GGKLHLKLNIGKRPIANKYREGKMKSTLKRELK----RSRLPGRSSN 44
>SB_10239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
GGKLHL+LN+ RPIANKYREGK+K TLKRE K
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLKRELK 34
>SB_42346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
GGKLHL+LN+ RPIANKYREGK+K TLKRE K
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLKRELK 34
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/36 (72%), Positives = 26/36 (72%)
Frame = -3
Query: 355 VLFNFPSRYLFAIGLAVIFSLRWSLPPA*GCTLNNP 248
VLF FPSRYLFAIGL IFS RWSLPP GC P
Sbjct: 89 VLFIFPSRYLFAIGLVPIFSFRWSLPPILGCIPKQP 124
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/36 (72%), Positives = 26/36 (72%)
Frame = -3
Query: 355 VLFNFPSRYLFAIGLAVIFSLRWSLPPA*GCTLNNP 248
VLF FPSRYLFAIGL IFS RWSLPP GC P
Sbjct: 58 VLFIFPSRYLFAIGLVPIFSFRWSLPPILGCIPKQP 93
>SB_36138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
GGKLHL+LN+ RPIANKYREGK+K TLK+ K
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLKKRVK 34
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 338 GKVEKNFEERVQEYVKPFRGKP 403
GK++ ++RV++YVKP +GKP
Sbjct: 23 GKMKSTLKKRVKKYVKPLKGKP 44
>SB_15035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
GGKLHL+LN+ RPIANKYREGK+K TLK+ K
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLKKRVK 34
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 338 GKVEKNFEERVQEYVKPFRGK 400
GK++ ++RV++YVKP +GK
Sbjct: 23 GKMKSTLKKRVKKYVKPLKGK 43
>SB_25175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 54.4 bits (125), Expect = 9e-08
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
GGKLHL+LN+ RPIANKYREGK+K TL++ K
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKMKSTLEKRVK 34
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 338 GKVEKNFEERVQEYVKPFRGK 400
GK++ E+RV++YVKP +GK
Sbjct: 23 GKMKSTLEKRVKKYVKPLKGK 43
>SB_49084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTL 359
GGKLHL+LN+ RPIANKYREG++K TL
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGQMKSTL 29
>SB_34898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 276 GGKLHLRLNMTARPIANKYREGKLKRTLKREFK 374
GGKLHL+LN+ RPIANKYREGK ++ ++ K
Sbjct: 2 GGKLHLKLNIGTRPIANKYREGKDEKHFEKRVK 34
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 338 GKVEKNFEERVQEYVKPFRGKPAKLE*TNGEIH 436
GK EK+FE+RV++YVK +GK L IH
Sbjct: 23 GKDEKHFEKRVKKYVKTLKGKRMGLAMRRARIH 55
>SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)
Length = 269
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = -1
Query: 660 TIRGPNVF*TNKTRTVSRAI------VLNPRRTG-RDALLREKCTSSRDVKRFTYRAEEN 502
T R PNV NKTRT + V PR R KCT+++ ++ TY +
Sbjct: 19 TPRHPNVRTRNKTRTRTYTHPDAPIHVHAPRHANVRTRTQTRKCTNTQ-TRKCTYTHPDI 77
Query: 501 ERTKRTFRQHLNARKRTPERK 439
++ R H NAR+RT RK
Sbjct: 78 QKHVHAPR-HANARRRTKTRK 97
>SB_52000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 344 VEKNFEERVQEYVKPFRGK 400
++ +FE+RV++YVKP +GK
Sbjct: 1 MKSHFEKRVKKYVKPLKGK 19
>SB_3203| Best HMM Match : FGF (HMM E-Value=0.013)
Length = 423
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 279 GKLHLRLNMTARPIANKYREGKLKRTLKREFKS--T*NRSGVNLRNSNERTERFIVFSR- 449
GK+++RLN + R GK+ L R K NR G N + +I +R
Sbjct: 9 GKMYIRLNRHGKMYIRLNRHGKMYIRLNRHGKMYVRPNRHGKMYVRPNRHGKMYIRLNRH 68
Query: 450 AYVYVRSDVDGTFVSCVRSPRHG 518
+Y+R + G +R RHG
Sbjct: 69 GKMYIRLNRHGKMY--IRLNRHG 89
Score = 28.3 bits (60), Expect = 6.7
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +3
Query: 279 GKLHLRLNMTARPIANKYREGKLKRTLKREFKS--T*NRSGVNLRNSNERTERFIVFSR- 449
GK+++RLN + R GK+ L R K +R+G N + +I +R
Sbjct: 242 GKMYIRLNRHGKMYVRPNRHGKMYIRLNRHGKMYIRLDRNGKMYIRLNRHGKMYIRLNRH 301
Query: 450 AYVYVRSDVDGTFVSCVRSPRHGT--*NV*RPEKTCTS 557
+Y+R + G +R RHG + R K CTS
Sbjct: 302 GKMYIRLNRHGKMY--IRLNRHGKMYIRLNRHGKICTS 337
>SB_9945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 356 FEERVQEYVKPFRGK 400
FE+RV++YVKP +GK
Sbjct: 5 FEKRVKKYVKPLKGK 19
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 588 RRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
R+ R R K R KR R +R +R RQ RKR +RKR
Sbjct: 1040 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKR 1090
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 588 RRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
R+ R R K R KR R +R +R RQ RKR +RKR
Sbjct: 1082 RKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRKRKR 1132
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 609 RAIVLNPRRTGRDALLREKCTSS--RDVKRFTYRAEENERTKRTFRQHLNARKRTPER 442
R + LN + A LRE+ + R + ++ +E R + F+QH NA K+ ER
Sbjct: 1421 RLMALNESQGNEIAKLRERIGTMVHRLEENEKHKHDEIHRLNQEFQQHTNASKQEQER 1478
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,694
Number of Sequences: 59808
Number of extensions: 444548
Number of successful extensions: 1382
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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