Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0222
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   4.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.9  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 570 ALLREKCTSSRDVKRFT-YRAEENERTKRTFRQHLNARKRTPERKR 436
           A L +    +R++  FT Y AEE+ER ++T  Q      +TP++KR
Sbjct: 85  ARLLQDAIRAREIVAFTSYLAEEDERKRKTREQMEGDNSKTPKKKR 130


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 612 SRAIVLNPRRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
           SR     PR   R ++ R+     R+ +R   R+ E+ R +R   +    R+R+PER+R
Sbjct: 260 SRKDQRKPREDRRRSVERQ---DQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRR 315


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 284   TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 412
             T  K K+ +  DS +     VE+  EE+V + +K  RGK  KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 284   TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 412
             T  K K+ +  DS +     VE+  EE+V + +K  RGK  KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
 Frame = -1

Query: 336 HGTCSLSVSRSYLALDGVYHPL---------RAALSTTRL*GASL-SPRPSVATGLAPST 187
           +G   L +S +Y AL  ++H            A+ + TR+   S  S RP  +TG APS 
Sbjct: 12  NGLSKLIISFNYSALSHIFHSWSVLVSMTTKHASTTNTRMERPSTASSRPRTSTGRAPSA 71

Query: 186 GKRPRS 169
             RP S
Sbjct: 72  RARPPS 77


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 588 RRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
           R+ G+ +  R +  S RD +R   R+   ER +   R   + R+R  ER+R
Sbjct: 154 RKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRGTTSDRRRDDERRR 204


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 588 RRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
           R+ G+ +  R +  S RD +R   R+   ER +   R   + R+R  ER+R
Sbjct: 280 RKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRGTTSDRRRDDERRR 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,774
Number of Sequences: 27780
Number of extensions: 312548
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)