Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0222
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.96 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   8.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 113 HLPLSIKTTGFSAGLYSCSLAATKE 39
           H PLS+K  G   GL    LA T +
Sbjct: 319 HTPLSVKFPGMGHGLQPPDLAGTSQ 343


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 715 IFNACVISLMIPSEC-VDRNDTRS 647
           +F+  VI L+IPS+C    ND +S
Sbjct: 16  LFSFVVILLIIPSKCEAVSNDRQS 39


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 107 PLSIKTTGFSAGLYSCSLAATKE 39
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 107 PLSIKTTGFSAGLYSCSLAATKE 39
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,172
Number of Sequences: 438
Number of extensions: 4103
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)