Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0215
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 31 0.25
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 2.3
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 26 5.3
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 26 5.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 7.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 9.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 9.3
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 9.3
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 9.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 9.3
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 367 DNSDVEGIQELTLIEMHTRKTGSLVERFKVLSVIE*MDRAIASS 236
D+ DV + LT E + SL++++KV SV+ +D ASS
Sbjct: 1066 DSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASS 1109
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -3
Query: 120 RYHSLCQFYNIHHQ--CLVGSHLG 55
+Y++ C FYNI H C G LG
Sbjct: 35 KYYNFCPFYNIQHNYTCQTGDPLG 58
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 667 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 578
+T TV+ESGSSS+ + YP ++S H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 33 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 197
+ K+ D + L DD KD+ ++ +N +Y NK ++ F + + F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 607 EDIGMNAYYYYFHSHLPFWWTSEKYG 684
+DIGM AY L F W S+++G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = -2
Query: 631 SKRSCQYPQ*SMSAFVLHYCIKRR*NNWLC------KRSSR-FPCECHLSCGFRINEAIL 473
S R C+ P +M++ YC ++C KR +R + E H+
Sbjct: 419 STRICRIPPETMASL---YCGPEADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRC 475
Query: 472 HLCYVNFLQHFHIHKHFRVY 413
LC F++H + +H R++
Sbjct: 476 DLCKAGFVRHHDLKRHLRIH 495
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 45 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 137
L+FF Q+V Q+N +DEY + + D E +DN
Sbjct: 49 LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 643 HSHLPFWWTSEKYGALKERRGEV 711
HSHLPF +T E + +K R G V
Sbjct: 1085 HSHLPFKFTPESF--IKIRNGNV 1105
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 558 RIIGFVNEVVVFLVNAILAAASGLMRPSCIFVT*IFCSTS 439
++IG NE V + NAI + +GL P+ + +FC S
Sbjct: 585 QVIG-QNEAVTAVANAIRLSRAGLSDPNQPIASFLFCGPS 623
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 39 KILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 161
K L + S YYK+ K Y + N D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 24 VEKQKKILSFFQDVSQLNTDDEY---YKIGKDYDIEMNMDNYTNKKAVEEFLKMY 179
+EK K I+ F+ D+ T +EY +K +D+ ++ +++ L++Y
Sbjct: 496 IEKIKNIVPFYVDIDDTKTTEEYIINFKKNSWLFFRKKIDSEMSEVLLQQRLRVY 550
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 326 NQGQFL-YAFYIAVIQRSDCHG 388
N G FL YAF+ VI+ D HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,094
Number of Sequences: 5004
Number of extensions: 62654
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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