Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0215
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1132 - 24530921-24532906 33 0.19
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657... 33 0.26
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 33 0.34
05_01_0486 - 4047055-4049013 33 0.34
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 32 0.59
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378... 31 1.4
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322... 29 3.2
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 29 3.2
06_02_0019 - 10656005-10657511,10657712-10658739 29 4.2
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 29 4.2
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 29 5.5
02_05_0564 + 30003817-30005778 28 7.3
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 9.6
>08_02_1132 - 24530921-24532906
Length = 661
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -3
Query: 597 CQPLFFIIV*NGVRIIGFVNEVVVFLVNAILAAAS-GLMRPSCIFVT*IFCSTSIFINIL 421
C L +++ +GV+I+G ++F ++ AS G++ I + + ++++
Sbjct: 358 CPKLLCVMIGDGVQILGMAIVTIIFSTLGFMSPASRGMLLTGMIILYLFLGIAAGYVSVR 417
Query: 420 GYTSYGAGTTKPWQSERWITA 358
+ + GT++ W+S W+TA
Sbjct: 418 LWKTI-KGTSEGWRSVSWLTA 437
>10_07_0132 +
13263577-13263732,13265391-13265456,13265607-13265705,
13267020-13267084,13267210-13267294,13267389-13267422,
13267539-13267642,13268085-13268408,13269090-13269605
Length = 482
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = -3
Query: 564 GVRIIGFVNEVVVFLVNAILAAASGLMRPSCIFVT*IFCSTSIFINILGYTSYGAGTTKP 385
G ++ F N V A++A SG PS IFCS NILGY+S G+T
Sbjct: 145 GFWLLDFSNNTVQGPARALMADLSGRHGPSAANA--IFCSWMALGNILGYSS---GSTND 199
Query: 384 W 382
W
Sbjct: 200 W 200
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 565 RR*NNWLCKRSSRFPCECHLSCGFRINEAILHLCYVNFLQHFHIHKHFRVYFIR 404
RR + WL ++ L GFR++ A+ +LC + +L+ I K R IR
Sbjct: 983 RRRSGWLFIAAAPVYASTELKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036
>05_01_0486 - 4047055-4049013
Length = 652
Score = 32.7 bits (71), Expect = 0.34
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -3
Query: 597 CQPLFFIIV*NGVRIIGFVNEVVVFLVNAILAAAS-GLMRPSCIFVT*IFCSTSIFINIL 421
C L ++V +G++I G +VF L+ AS G++ I + + ++ +
Sbjct: 349 CSKLLCVMVADGIQITGMAVVTIVFAALGFLSPASRGMLLTGMIILYLFLGIIAGYVGVR 408
Query: 420 GYTSYGAGTTKPWQSERWITA 358
+ + GT++ W+S W+T+
Sbjct: 409 VWRTI-KGTSEGWKSVAWLTS 428
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 284 ETFYKTACFARVHLNQGQFLYAF-YIAVIQRSDCHGF 391
ETF+ TAC R HL QG+ + A+ Y+ + DC GF
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GF 462
>03_01_0502 -
3779551-3779562,3779863-3780012,3780129-3780172,
3780256-3780319,3780422-3780655,3780765-3780908,
3781027-3781221,3781447-3781522,3781689-3781788,
3781955-3781988,3782076-3782160,3782226-3782290,
3782380-3782478,3782810-3782875,3785485-3785721
Length = 534
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -3
Query: 564 GVRIIGFVNEVVVFLVNAILAAASGLMRPSCIFVT*IFCSTSIFINILGYTSYGAGTTKP 385
G ++ F N V A++A SG P IFCS NILGY+S G+T
Sbjct: 172 GFWLLDFSNNTVQGPARALMADLSGRHGPGT--ANSIFCSWMAMGNILGYSS---GSTNN 226
Query: 384 W 382
W
Sbjct: 227 W 227
>11_01_0419 +
3226224-3226756,3228010-3228169,3228256-3228435,
3228525-3228659,3229262-3229344,3229442-3229535,
3229649-3229735
Length = 423
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 436 IHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHT 314
IHK FR++ R + E +AIRA NS + L L +M T
Sbjct: 319 IHKPFRIHLGRGLHGECLAIRADGNSKLSHEIGLELSKMST 359
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Frame = +3
Query: 9 VDAVFVEKQKKILSFFQDVSQLNTDDEYYK-------IGKDYDIEMNMDNYTNKKAVEEF 167
VD V+ Q+K + ++ ++ ++ Y+ I K E + Y NK +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710
Query: 168 LKMYRTGF----MPKNLEFSVFYDKMRDEAI 248
LK+ GF + K LE D M + A+
Sbjct: 711 LKLPEMGFGTSLLQKRLEIETMTDNMSELAV 741
>06_02_0019 - 10656005-10657511,10657712-10658739
Length = 844
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/32 (31%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = -3
Query: 447 STSIFINILGY-TSYGAGTTKPWQSERWITAM 355
+T+I ++++G +YGAG+++ W++ ++ AM
Sbjct: 750 NTTIVLDMIGLLVAYGAGSSREWETSGYVIAM 781
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 517 ECHLSCGFRINEAILHLCYVNFLQHFHIHKHFRVYFI-RSRNNETVAIRAL-DNSDVE 350
+C L C I+ L+ Y+ +QHFH+ + + RS+N+ T +I+ L D S ++
Sbjct: 274 KCPL-CFMMISTKELYTIYITQVQHFHVGDNVTFTLLSRSKNSLTPSIKNLTDESTID 330
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +1
Query: 301 CLFCACASQSRSILVCLLHRCYPA 372
CLFC SR ILVC L RC A
Sbjct: 58 CLFCEANFISRRILVCDLLRCLVA 81
>02_05_0564 + 30003817-30005778
Length = 653
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 588 LFFIIV*NGVRIIGFVNEVVVFLVNAILAAAS-GLMRPSCIFVT*IFCSTSIFINILGYT 412
L +++ +GV+I+G + F ++ AS G++ IF+ + + + + +
Sbjct: 354 LLCVMIGDGVQILGMAIVTIFFAAFGFMSPASRGMLLTGMIFLYMLLGIVAGYAAVRLWR 413
Query: 411 SYGAGTTKPWQSERWITA 358
+ GT++ W+S W TA
Sbjct: 414 TL-KGTSEGWRSVSWSTA 430
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 577 NEEQRLTYFTEDIGMNAYYYYFHSHLPFWWTSEKYGALKERRGE 708
N EQ +T + I ++A+ + H WWTS+KY K +RG+
Sbjct: 118 NFEQYMTCKLDWINVDAWKCFCH-----WWTSDKYKE-KRKRGQ 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,828
Number of Sequences: 37544
Number of extensions: 358135
Number of successful extensions: 813
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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