Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0215
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.21 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.21 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   0.65 
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ...    31   0.86 
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   3.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   6.1  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    28   8.0  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 430 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 272
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 430 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 272
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 150 KAVEEFLKMYRTGFMPKNLEFSVF---YDKMRDEAIALSIYSITLRT 281
           KA+E F +MY+TG MP  + +S     Y K       LS+Y   + T
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVAT 285


>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
           Homo sapiens, EMBL:HSU81006
          Length = 627

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 588 LFFIIV*NGVRIIGFVNEVVVFLVNAILAAAS-GLMRPSCIFVT*IFCSTSIFINILGYT 412
           L  ++V +GV+I+G     ++F     ++ AS G +    +F   I    + ++++  + 
Sbjct: 326 LLCVMVGDGVQILGMAVVTILFAALGFMSPASRGTLITGMLFFYMILGIAAGYVSVRLWR 385

Query: 411 SYGAGTTKPWQSERWITA 358
           + G G  + W S  W  A
Sbjct: 386 TIGCGEHRGWMSVAWKAA 403


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 9   VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 173
           V A+ +EK++K L    D S      E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 75  NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 170
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 27  EKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 200
           EK +K+L+  Q   + QL   D+  K+G  Y  E  +DN       ++   +  +     
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 201 NLEFSVF 221
            LEF +F
Sbjct: 142 ALEFRLF 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,179
Number of Sequences: 28952
Number of extensions: 307844
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)