Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0214
(693 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 3.6
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 4.8
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 4.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.4
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 6.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 6.4
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 21 8.4
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 21 8.4
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 21 8.4
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 21 8.4
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 21 8.4
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 42 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 176
M C P DT +Y+F R Y + T VI + + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 457 RHGR**RKITIRDSYEACNRNEYTLNI 537
+H R R T+ +SY+A + N +L++
Sbjct: 29 KHSRRHRDFTVAESYDASSSNSDSLSM 55
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 14 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
Y C + + LRR + ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 4.8
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = -3
Query: 502 RKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323
R S + TTS GSG V V + S N D+ L + + ++++
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQP 281
Query: 322 **GRHLKDASPVLDHAICKS 263
H S L + C S
Sbjct: 282 SLASHHSHLSSALGRSACHS 301
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +2
Query: 14 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +2
Query: 14 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 127
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 428 RQQARKLPTPGTGGSDE 478
R+Q RK TPG SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 428 RQQARKLPTPGTGGSDE 478
R+Q RK TPG SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 657 SAAHKCNYELFNRNNFSIRYWSWNY 583
S ++ NY +N NN+ ++ NY
Sbjct: 84 SLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 657 SAAHKCNYELFNRNNFSIRYWSWNY 583
S ++ NY +N NN+ ++ NY
Sbjct: 84 SLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 657 SAAHKCNYELFNRNNFSIRYWSWNY 583
S ++ NY +N NN+ ++ NY
Sbjct: 84 SLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 657 SAAHKCNYELFNRNNFSIRYWSWNY 583
S ++ NY +N NN+ ++ NY
Sbjct: 84 SLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 657 SAAHKCNYELFNRNNFSIRYWSWNY 583
S ++ NY +N NN+ ++ NY
Sbjct: 84 SLSNNYNYSNYNNNNYKQLCYNINY 108
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,550
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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