Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0210
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     34   0.058
04_04_0495 - 25623562-25623775,25623902-25624004,25624129-256242...    29   2.9  
08_01_0054 - 367770-370166                                             28   3.8  

>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 34.3 bits (75), Expect = 0.058
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -3

Query: 498  PQFNFSVKYCQSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCII 355
            P  N SVKY    H+ K +  F+ ++LCV +L+  K L   F+++ II
Sbjct: 1152 PSPNVSVKYDVISHLKKYQPCFQCMMLCVCLLICVKLLLLHFLFLKII 1199


>04_04_0495 -
           25623562-25623775,25623902-25624004,25624129-25624231,
           25624353-25624562
          Length = 209

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 354 NNSDQIGINTYWAINAK-CFYDNCNKNELHINNTLF 250
           N  D IGIN Y AI AK C Y  C  N    N  ++
Sbjct: 22  NKVDFIGINQYTAIYAKDCIYSPCALNTYEGNALVY 57


>08_01_0054 - 367770-370166
          Length = 798

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 378 KFVYMCIINNSDQIGINTYWAINAKCFYDNCNKNELHINNTLFLLPFNIK 229
           K +Y+ +I +  +  I TY  I      +NC  + L I   L+L+ F+++
Sbjct: 608 KELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLE 657


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,313
Number of Sequences: 37544
Number of extensions: 198784
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)