Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0210
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)                 27   9.1  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 27   9.1  

>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = -3

Query: 486 FSVKYCQSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCI 358
           FS K   S+H  K+ NN K++++ V ++LV+  LS+   Y+C+
Sbjct: 283 FSAKN-MSIHRAKLHNNGKVVVILVLIVLVFM-LSWG-PYLCL 322


>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 393 KELSYKFVYMCIINNSDQIGINTYWAINAKCFYDN 289
           + +SYK +Y    NN+ Q+   +YW +N  C  D+
Sbjct: 166 QNISYKNIYCAKCNNASQL---SYWLMNITCENDD 197


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -3

Query: 423 ILCVYMLLVYKELSYK--FVYMCIINNSDQIGINTYWAINAKC-----FYDNCNKNELHI 265
           ++CV +   +KE S+K  ++Y+ I+NN     I  +   N K      F   C  N+ H 
Sbjct: 772 VICVAIPYGFKESSHKRLYMYIIIVNNPPYANIFYFVFTNKKLRLAYNFCAMCCGNKEHP 831

Query: 264 NNTLFLL 244
           +  LFL+
Sbjct: 832 HANLFLV 838


>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
          Length = 465

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 447 VRNNFKIIILCVYMLLVYKELSYKFVYMCIINN--SDQIGINTYWAINAKCFYDNCNKNE 274
           +R + K++ L ++ ++  K   YKFVY   +       +G      +   C+ +N    +
Sbjct: 78  LRPSVKLVCLPLWKMVTDKFSKYKFVYFISMFGWIIGYLGQTFVCPVQLPCYVENPLTTQ 137

Query: 273 LHINNTLFLLPFN 235
           + I  T +L PFN
Sbjct: 138 VAIPTT-YLAPFN 149


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 333 CLFGHCYL*YTCKQICMITL 392
           CLF  CYL Y C Q+  I L
Sbjct: 251 CLFIFCYLPYICVQVSTIVL 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,522
Number of Sequences: 59808
Number of extensions: 282886
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)