Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0210
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm rece...    29   1.5  
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    27   6.0  
AC024839-9|AAY86283.1|   89|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC024839-6|AAY86284.1|   89|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm rece...    27   7.9  
AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm rece...    27   7.9  

>AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 172 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 302 VFMTTVTKM-NYT*IILYFCCLSI*KFRITVL*NSN*RSYVLNYLMIL 162
           +   + +KM NY  +++YFCC SI    + ++   N  +Y   + MI+
Sbjct: 32  ILTKSTSKMGNYRHLMIYFCCFSILFSTLDIIVQPNIHTYKSAFFMIM 79


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 468 QSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCIINNSDQIGIN-TYWAINAKC 301
           +S+H++K+  +   +  CV++ L+   + +  + M  INN D +  N +   +N  C
Sbjct: 479 KSIHLSKI--SVVSVFACVWIFLIASHVMFSIMQMNAINNLDALFSNLSKGRVNLSC 533


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 468 QSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCIINNSDQIGIN-TYWAINAKC 301
           +S+H++K+  +   +  CV++ L+   + +  + M  INN D +  N +   +N  C
Sbjct: 479 KSIHLSKI--SVVSVFACVWIFLIASHVMFSIMQMNAINNLDALFSNLSKGRVNLSC 533


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 492 FNFSVKYCQSLHVTKVRNNFKIIILCVYM 406
           FNF  K C S ++T+ RN   ++ +C+Y+
Sbjct: 106 FNF-YKMCVSRNLTRGRNRSSVVAVCMYI 133


>AC024839-9|AAY86283.1|   89|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.10 protein.
          Length = 89

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -3

Query: 429 IIILCVYM--LLVYKELSYKFVYMCIINNSD 343
           ++++ VY+  L  Y  L+YKF+Y C+ ++++
Sbjct: 5   LVVVVVYLNALGYYAVLAYKFIYFCVQHDAN 35


>AC024839-6|AAY86284.1|   89|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.9 protein.
          Length = 89

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -3

Query: 429 IIILCVYM--LLVYKELSYKFVYMCIINNSD 343
           ++++ VY+  L  Y  L+YKF+Y C+ ++++
Sbjct: 5   LVVVVVYLNALGYYAVLAYKFIYFCVQHDAN 35


>AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 174 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 272 YT*IILYFCCLSI*KFRITVL*NSN*RSYVLNYLMIL 162
           Y  +++YFCC SI    + V+   N ++Y  ++ M++
Sbjct: 44  YRHLMIYFCCCSIFFSIVDVIVQPNIQTYQSSFFMVI 80


>AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 175 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 272 YT*IILYFCCLSI*KFRITVL*NSN*RSYVLNYLMIL 162
           Y  +++YFCC SI    + V+   N ++Y  ++ M++
Sbjct: 44  YRHLMIYFCCCSIFFSIVDVIVQPNIQTYQSSFFMVI 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,932
Number of Sequences: 27780
Number of extensions: 227274
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)