Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0210
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 110 HLRSPNGMKKFSVRYTEHICMILQSLNGH 24
           HLR+  G K F      + C+    LN H
Sbjct: 7   HLRNHFGSKPFKCEKCSYSCVNKSMLNSH 35


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 207 KLKLEELRVKLSNDF 163
           +LK EEL  K++ND+
Sbjct: 505 QLKSEELNAKVTNDW 519


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 375 FVYMCIINNSDQIGINTYWAINAKCFYDNCNKNELHINNTLF 250
           F+ + + NN        +W  + +C Y N +    + N T F
Sbjct: 412 FLNLTVENNRRNPWFVEFWEHHFQCRYPNASVTPYNKNYTKF 453


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 369 YMCIINNS 346
           Y+CI+NNS
Sbjct: 285 YLCIVNNS 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,837
Number of Sequences: 438
Number of extensions: 2707
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)