Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0209
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   7.1  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   7.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 636 FALLLNARFLSSLSCLRTPALFFDRCTAPVKLPAW 532
           F+ LL+   L   + LRT    +DRC  P+K   W
Sbjct: 38  FSSLLSVILLCIFTLLRTKFNTYDRCIPPMKKSLW 72


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 149 GYLKRVIVTPAVYPRLLEFLHVDIQST 69
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 467 VVTWRKRSSPFKTPRDPVRGHCQAGSLTGAVHLSKNNAGVL-RQLSE 604
           VV WRK S   +   D +R H Q G L+  V L + +   L +QL+E
Sbjct: 352 VVDWRKNSDQLEVITDVLRDH-QVG-LSYVVKLMQEDLATLNKQLTE 396


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 143  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 51
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,542
Number of Sequences: 5004
Number of extensions: 53381
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)