Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0209
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.8
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 29 2.4
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 29 2.4
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 3.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.2
07_03_1623 - 28196981-28197532,28197667-28198058,28198472-281986... 28 5.6
05_05_0175 + 22966151-22967614 28 7.4
05_02_0028 - 5764980-5766374 28 7.4
03_02_0182 - 6216991-6217238,6218076-6218197,6218412-6218497,621... 28 7.4
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 28 7.4
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 28 7.4
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 9.7
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 167 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 66
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 202 HCPYLLSSETTAKGTGLGNQRGKKTLLSLTLVWH 303
H P L S TT T GN G TL + WH
Sbjct: 52 HLPPLPVSTTTTTSTSPGNGNGNATLFQVQPFWH 85
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 143 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRE 244
G+ PR + D EW N PT+ ++ + +PRE
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 587 GHLRYSLTDVPPQSNSPPGSVLEPDHGEF*TATSVSATSPLCTLGTKHRAPADIIDR 417
GH R+ + D + S G + D +VSA + LC + H AP + DR
Sbjct: 384 GHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALCAVLCAHEAPGGLPDR 440
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 471 TTLHAWNETPCARRYY 424
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>07_03_1623 -
28196981-28197532,28197667-28198058,28198472-28198661,
28198773-28198972,28199733-28199838
Length = 479
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 225 RNHSQGNGLGESAGKEDPVELDSSLAL 305
++HS+G G G S+G+ D +++ LAL
Sbjct: 417 QDHSEGYGSGSSSGRNDGLDVPELLAL 443
>05_05_0175 + 22966151-22967614
Length = 487
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 538 RLAVSSNRITGSFKRRRAFPPRHHSARLERNTVRPP 431
R A S R +G + ++ PPRHH + L+R PP
Sbjct: 263 RRAQSLRRASGREQPKQP-PPRHHVSTLQRKESEPP 297
>05_02_0028 - 5764980-5766374
Length = 464
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 532 AVSSNRITGSFKRRRAFPPRHHSA---RLERNTV 440
AVS ++G + R + PP HHS RL NT+
Sbjct: 15 AVSGGGLSGLYSRASSSPPLHHSGSRRRLRTNTL 48
>03_02_0182 -
6216991-6217238,6218076-6218197,6218412-6218497,
6219105-6219218
Length = 189
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 372 SGFSATIARNDLPLMLHLSCLLTMPD*SQAQQGLLSPLIPQARS 241
SG T PL+ LSC LT + +L+PL P R+
Sbjct: 117 SGLGRTDNDGSFPLLRALSCCLTPQGCLSGENPVLAPLSPDGRT 160
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 560 VPPQSNSPPGSVLEPDHGEF*TATS-VSATSPLCTLGTKHRAPADIIDR 417
VP N PG++LEP + + T++ + S T G K D+ D+
Sbjct: 213 VPQPLNVGPGAILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVADK 261
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Frame = -1
Query: 642 ASFALLLNARFLSSLSCLRTPALFFD--------RCTAPVKL--PAWQCPRTGSRGVLNG 493
A +A L+ A+ + L + P +FD RC A +L W P T G G
Sbjct: 124 AEWARLVAAKGVEDLVFVNIPVHYFDVPLPADILRCAALRRLFIGNWNFPATS--GFPRG 181
Query: 492 DERFRHVTTLHAWNETPCAR 433
+ F H+ L+ WN AR
Sbjct: 182 ADVFPHLLELYIWNTVMSAR 201
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 593 ALGHLRYSLTDVPPQSNSPPGSVLEP 516
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,718,928
Number of Sequences: 37544
Number of extensions: 415197
Number of successful extensions: 1181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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